Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   PE794_RS06910 Genome accession   NZ_CP115971
Coordinates   1498221..1498769 (-) Length   182 a.a.
NCBI ID   WP_005598298.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae strain HBS1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1493221..1503769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PE794_RS06895 (PE794_06895) - 1493705..1494226 (+) 522 WP_005598290.1 SprT family zinc-dependent metalloprotease -
  PE794_RS06900 (PE794_06900) - 1494331..1495617 (+) 1287 WP_005598292.1 NAD(P)/FAD-dependent oxidoreductase -
  PE794_RS06905 (PE794_06905) - 1495807..1498146 (-) 2340 WP_005598295.1 Tex family protein -
  PE794_RS06910 (PE794_06910) pilF 1498221..1498769 (-) 549 WP_005598298.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  PE794_RS06915 (PE794_06915) - 1498823..1500004 (-) 1182 WP_005598300.1 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN -
  PE794_RS06940 (PE794_06940) gltX 1500908..1502347 (+) 1440 WP_005598316.1 glutamate--tRNA ligase -
  PE794_RS06950 (PE794_06950) yefM 1502684..1502935 (+) 252 WP_005598318.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  PE794_RS06955 (PE794_06955) - 1502932..1503192 (+) 261 WP_005605064.1 Txe/YoeB family addiction module toxin -
  PE794_RS06960 (PE794_06960) - 1503351..1503518 (-) 168 WP_005598320.1 Trm112 family protein -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20641.32 Da        Isoelectric Point: 6.9479

>NTDB_id=774732 PE794_RS06910 WP_005598298.1 1498221..1498769(-) (pilF) [Actinobacillus pleuropneumoniae strain HBS1]
MNLAKFLRNLTACMLLSVLFGCSSQLPTSQITFNRSEAVKARINLALAYLDQHDLPKAKENIDKALSHDQNDYLPHSVLA
YYYQQIGDQVHAEQAYQQALKSSDNRPDVLNNYGTFLCKQAKFDQAYQQFEQAVKSEQPYYHQADSLENIVLCAKQEPNL
AKVNEALSQLEKLDKARAAALR

Nucleotide


Download         Length: 549 bp        

>NTDB_id=774732 PE794_RS06910 WP_005598298.1 1498221..1498769(-) (pilF) [Actinobacillus pleuropneumoniae strain HBS1]
ATGAACCTTGCAAAATTTTTGCGAAATTTGACCGCTTGTATGCTGTTATCCGTGTTATTCGGTTGTTCTTCTCAGCTTCC
AACCTCCCAAATTACCTTTAATCGTTCGGAAGCGGTTAAAGCCCGGATTAATTTAGCCTTAGCGTATCTCGATCAACATG
ATTTACCCAAAGCGAAAGAGAATATTGATAAAGCGCTAAGCCACGATCAAAACGATTATTTGCCTCACTCTGTTTTAGCT
TATTACTATCAGCAAATCGGTGATCAAGTTCATGCGGAACAGGCTTATCAGCAAGCATTGAAATCAAGTGATAATCGTCC
GGATGTCTTAAATAATTACGGAACTTTTCTGTGTAAACAAGCCAAATTTGATCAGGCATATCAGCAGTTTGAGCAAGCGG
TGAAAAGCGAACAACCTTATTATCATCAAGCCGATAGCCTCGAAAATATTGTGTTATGTGCCAAACAAGAGCCGAATTTA
GCTAAAGTAAACGAAGCGTTAAGCCAATTAGAAAAGCTGGATAAAGCAAGAGCGGCGGCACTACGCTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Glaesserella parasuis strain SC1401

65.957

100

0.681
  pilF/pilF2 Haemophilus influenzae Rd KW20

46.199

93.956

0.434