Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   PE074_RS09450 Genome accession   NZ_CP115969
Coordinates   1988242..1989633 (-) Length   463 a.a.
NCBI ID   WP_063455141.1    Uniprot ID   -
Organism   Wohlfahrtiimonas chitiniclastica strain BM-Y     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1983242..1994633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PE074_RS09430 (PE074_09430) - 1983758..1985125 (-) 1368 WP_026165652.1 MATE family efflux transporter -
  PE074_RS09435 (PE074_09435) pykF 1985214..1986620 (-) 1407 WP_018121789.1 pyruvate kinase PykF -
  PE074_RS09440 (PE074_09440) mutT 1986651..1987067 (-) 417 WP_272732272.1 8-oxo-dGTP diphosphatase MutT -
  PE074_RS09445 (PE074_09445) - 1987064..1988242 (-) 1179 WP_063455140.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  PE074_RS09450 (PE074_09450) pilR 1988242..1989633 (-) 1392 WP_063455141.1 sigma-54 dependent transcriptional regulator Regulator
  PE074_RS09455 (PE074_09455) - 1989670..1991268 (-) 1599 WP_063455142.1 HAMP domain-containing sensor histidine kinase -
  PE074_RS09460 (PE074_09460) - 1991271..1991753 (-) 483 WP_018121784.1 DUF2726 domain-containing protein -
  PE074_RS09465 (PE074_09465) - 1991765..1993660 (-) 1896 WP_063455143.1 lytic transglycosylase domain-containing protein -
  PE074_RS09470 (PE074_09470) upp 1993683..1994318 (-) 636 WP_063455144.1 uracil phosphoribosyltransferase -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 51200.63 Da        Isoelectric Point: 4.8434

>NTDB_id=774719 PE074_RS09450 WP_063455141.1 1988242..1989633(-) (pilR) [Wohlfahrtiimonas chitiniclastica strain BM-Y]
MYKALIIDDEENICELISMSFLSIDIECVEAYSVSDAIVALQNEAFDVCLTDLKLPDGSGFDVLRYIQDKVPNLPVAMMT
AHGNVESAIEALKLGAFDFISKPFEINALRKLALNAVQTQKIPQVASKHGLYGDSVAMVSLRNQIRKLARSQSPIYITGE
SGVGKEVVARAIHAESPRFDGPFIAVNCGALSEHLVESELFGHKKGSFTGADKDKKGLFQAADGGTLLLDEIADLPLSMQ
VKLLRAIQERAIRPIGAMHEIPVNVRILSASHKSLAALVDAGEFRQDLFYRLNVISLYVPPLRERRGDVAILVKVILERL
NHDNGRAVTITEGALRRLDHYAFPGNVRELENILERASTLCDGDVIEEKDLLLNSNNELVLVEPVNAPTEDQSIPMIETG
DQDDPVIPDHIDDIEAYLAAVERKILKRALAEHDSKTEAAKQLGISFRTFRYRLKKLNIEDDD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=774719 PE074_RS09450 WP_063455141.1 1988242..1989633(-) (pilR) [Wohlfahrtiimonas chitiniclastica strain BM-Y]
ATGTATAAAGCGCTCATTATTGATGATGAAGAGAACATCTGCGAACTGATCTCCATGAGTTTTTTATCCATTGATATTGA
ATGTGTGGAAGCCTATTCAGTCTCAGATGCCATTGTGGCACTGCAAAATGAAGCCTTTGATGTCTGTTTGACGGATCTAA
AATTGCCCGATGGTTCAGGCTTTGATGTGCTGCGTTACATTCAGGATAAAGTGCCGAATTTACCAGTGGCGATGATGACG
GCGCATGGCAATGTGGAAAGTGCGATTGAAGCGCTTAAGCTTGGCGCATTTGATTTTATCTCTAAGCCTTTTGAGATCAA
TGCACTGCGTAAATTAGCCCTCAATGCGGTGCAAACGCAAAAGATCCCACAAGTGGCCTCTAAACATGGTTTATATGGCG
ATTCTGTGGCGATGGTGTCTCTTCGCAATCAAATCCGTAAATTGGCGCGTTCGCAATCCCCAATTTACATCACCGGTGAA
TCAGGCGTCGGTAAAGAAGTGGTGGCGCGTGCGATTCATGCAGAAAGTCCACGCTTTGATGGACCTTTCATTGCCGTGAA
CTGCGGTGCGTTATCGGAGCATTTGGTGGAAAGTGAGCTCTTTGGCCATAAAAAGGGGAGCTTTACAGGTGCCGATAAAG
ATAAAAAAGGGCTCTTTCAGGCTGCGGATGGCGGCACATTGCTGCTTGATGAAATTGCCGATTTACCGCTCTCAATGCAG
GTGAAATTACTGCGAGCCATTCAAGAGCGTGCCATTCGCCCGATTGGTGCAATGCATGAAATCCCCGTCAATGTGCGGAT
TTTATCGGCTTCTCATAAAAGTTTAGCGGCGCTTGTGGATGCCGGTGAGTTTCGTCAGGATCTTTTTTACCGTTTAAATG
TGATTTCGCTATATGTGCCGCCGTTGCGTGAGCGTCGGGGCGATGTGGCGATTTTGGTTAAAGTGATTTTAGAGCGTTTG
AATCATGACAATGGCCGCGCTGTGACGATCACAGAAGGCGCCTTGCGTCGTTTAGATCATTATGCATTTCCCGGCAATGT
GCGTGAGCTTGAGAACATCTTAGAGCGAGCTTCAACGCTGTGTGATGGGGATGTGATTGAGGAAAAAGATTTATTGCTTA
ATTCAAACAATGAATTAGTATTAGTAGAGCCAGTCAATGCACCGACAGAGGATCAATCGATCCCGATGATTGAAACGGGG
GATCAGGATGATCCTGTGATTCCCGATCACATCGATGACATTGAGGCATATTTAGCCGCCGTTGAGCGTAAAATTCTCAA
ACGGGCATTGGCAGAACATGACAGCAAAACCGAGGCGGCGAAACAGTTGGGCATCTCCTTTCGAACCTTTCGCTATCGAT
TAAAAAAACTCAACATAGAGGACGATGATTAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(132-297)

Bacterial regulatory protein, Fis family (HTH_8)

(418-457)

Response regulator receiver domain (Response_reg)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

52.165

99.784

0.521
  pilR Acinetobacter baumannii strain A118

45.824

100

0.462