Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   PG915_RS11635 Genome accession   NZ_CP115920
Coordinates   2582372..2583772 (-) Length   466 a.a.
NCBI ID   WP_353496677.1    Uniprot ID   A0AAU8BF27
Organism   Vibrio chaetopteri strain CB1-14     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2577372..2588772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PG915_RS11610 (PG915_11590) moaB 2577384..2577896 (-) 513 WP_112462417.1 molybdenum cofactor biosynthesis protein B -
  PG915_RS11615 (PG915_11595) moaA 2577944..2578933 (-) 990 WP_353496673.1 GTP 3',8-cyclase MoaA -
  PG915_RS11620 (PG915_11600) yvcK 2579300..2580127 (+) 828 WP_420884623.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  PG915_RS11625 (PG915_11605) - 2580349..2581950 (+) 1602 WP_353496675.1 long-chain fatty acid--CoA ligase -
  PG915_RS11630 (PG915_11610) - 2582025..2582375 (-) 351 WP_353496676.1 Hpt domain-containing protein -
  PG915_RS11635 (PG915_11615) luxO 2582372..2583772 (-) 1401 WP_353496677.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  PG915_RS11640 (PG915_11620) uvrB 2583919..2585949 (-) 2031 WP_353496678.1 excinuclease ABC subunit UvrB -
  PG915_RS11650 (PG915_11630) rsxA 2586869..2587450 (+) 582 WP_042476631.1 electron transport complex subunit RsxA -
  PG915_RS11655 (PG915_11635) rsxB 2587450..2588031 (+) 582 WP_112462411.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 51864.29 Da        Isoelectric Point: 5.3526

>NTDB_id=774459 PG915_RS11635 WP_353496677.1 2582372..2583772(-) (luxO) [Vibrio chaetopteri strain CB1-14]
MQPLFDEPKSRYLLMVEDTASVAALYRSYLSPLGIDINIVGNGRDAIQSLQHRTPDLILLDLRLPDMTGMDVLDAVKQSH
PDVPIIFMTAHGSIDIAVDAMQHGAQDFLIKPCEADRLRVTVTNAIRKASKLRDEINDTGSPSYQGFIGSSQPMQAVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAAVDRQGAAELADG
GTLFLDELCEMDLELQTKLLRFIQTGTFQKVGSSRMKKVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRD
REEDVIEIAYSLLGFMSHEEGKSFVRFSQDVIERFIHYEWPGNVRQLQNVLRNVVVLNHGKEITLDMLPPPLNEPLVVMK
PTASSITVSSFGPQDIVPLWQTERRTIEQAIEACDGNIPQAAKYLDVSPSTIYRKIQAWNASETKA

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=774459 PG915_RS11635 WP_353496677.1 2582372..2583772(-) (luxO) [Vibrio chaetopteri strain CB1-14]
ATGCAACCTTTATTCGACGAGCCGAAGTCTCGCTACTTACTGATGGTAGAAGATACGGCCTCCGTTGCAGCTTTATATCG
CTCGTATCTTTCTCCATTGGGGATTGATATCAATATCGTAGGCAATGGCCGCGATGCGATTCAAAGCTTACAGCATCGGA
CACCCGATCTGATACTTCTTGATCTGCGTCTTCCCGATATGACGGGGATGGATGTTTTGGACGCAGTGAAACAATCTCAT
CCAGACGTGCCTATCATCTTTATGACGGCGCACGGTTCTATTGATATCGCCGTCGATGCGATGCAGCACGGTGCCCAAGA
CTTTTTGATTAAGCCTTGTGAAGCTGACCGTCTGCGCGTAACAGTAACCAATGCGATTCGCAAAGCGTCTAAACTGCGCG
ATGAAATCAACGATACGGGTAGCCCAAGCTATCAAGGTTTTATCGGCAGTAGTCAGCCGATGCAAGCCGTATATCGCACT
ATCGATTCCGCCGCATCCAGTAAAGCCAGTATTTTTATTACGGGTGAGAGTGGTACCGGTAAAGAGGTATGTGCCGAAGC
CATTCACGCTGCGAGTAAACGCGGTGATAAACCATTTATCGCAATTAACTGTGCGGCGATCCCGAAAGATCTGATTGAAA
GTGAGTTGTTTGGTCACGTCAAAGGCGCCTTTACTGGCGCAGCGGTTGATAGACAAGGTGCGGCTGAGCTTGCTGATGGC
GGCACATTGTTTCTTGATGAGCTGTGCGAGATGGATCTCGAACTGCAAACCAAACTGCTGCGCTTTATCCAAACCGGTAC
TTTCCAAAAAGTGGGCTCTTCGCGCATGAAGAAAGTGGACGTGCGCTTTGTGTGTGCGACCAACCGCGACCCTTGGAAAG
AGGTACAAGAAGGGCGGTTTAGGGAAGACTTGTACTACCGTTTGTACGTGATCCCATTGCACCTGCCACCGCTTCGTGAT
CGTGAAGAAGACGTCATTGAAATTGCCTACTCGTTATTGGGTTTCATGTCGCATGAGGAAGGGAAGAGCTTCGTGCGCTT
TTCTCAAGATGTGATTGAACGCTTCATCCACTACGAGTGGCCAGGTAACGTGCGTCAATTGCAAAATGTGCTGCGCAATG
TCGTGGTACTTAACCACGGTAAAGAAATCACGTTAGATATGCTGCCGCCACCGTTGAATGAGCCTTTGGTCGTCATGAAA
CCAACCGCATCATCGATCACGGTCTCGTCATTTGGTCCACAAGATATTGTGCCGCTGTGGCAAACTGAGCGACGTACCAT
TGAACAGGCCATTGAGGCTTGTGATGGCAACATCCCACAGGCGGCAAAGTACCTGGACGTAAGTCCATCGACCATTTATA
GAAAAATCCAAGCATGGAATGCGAGTGAGACCAAAGCATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

83.073

96.352

0.8
  pilR Pseudomonas aeruginosa PAK

38.565

95.708

0.369