Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   QUR98_RS11215 Genome accession   NZ_CP128578
Coordinates   2338153..2339163 (+) Length   336 a.a.
NCBI ID   WP_000568519.1    Uniprot ID   Q32HA1
Organism   Escherichia coli strain VG38-53E1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2333153..2344163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUR98_RS11185 (QUR98_11185) nudB 2334877..2335329 (+) 453 WP_077393227.1 dihydroneopterin triphosphate diphosphatase -
  QUR98_RS11190 (QUR98_11190) yebC 2335358..2336098 (+) 741 WP_000907234.1 YebC/PmpR family DNA-binding transcriptional regulator -
  QUR98_RS11195 (QUR98_11195) ruvC 2336133..2336654 (+) 522 WP_001295503.1 crossover junction endodeoxyribonuclease RuvC -
  QUR98_RS11200 (QUR98_11200) yebB 2336656..2337258 (-) 603 WP_001024939.1 YebB family permuted papain-like enzyme -
  QUR98_RS11205 (QUR98_11205) yobI 2337329..2337394 (+) 66 WP_072093883.1 stress response small protein YobI -
  QUR98_RS11210 (QUR98_11210) ruvA 2337533..2338144 (+) 612 WP_000580323.1 Holliday junction branch migration protein RuvA -
  QUR98_RS11215 (QUR98_11215) ruvB 2338153..2339163 (+) 1011 WP_000568519.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QUR98_RS11220 (QUR98_11220) znuB 2339308..2340093 (-) 786 WP_001519834.1 zinc ABC transporter permease subunit ZnuB -
  QUR98_RS11225 (QUR98_11225) znuC 2340090..2340845 (-) 756 WP_000202996.1 zinc ABC transporter ATP-binding protein ZnuC -
  QUR98_RS11230 (QUR98_11230) znuA 2340924..2341856 (+) 933 WP_001347089.1 zinc ABC transporter substrate-binding protein ZnuA -
  QUR98_RS11235 (QUR98_11235) mepM 2341872..2343194 (+) 1323 WP_001184045.1 murein DD-endopeptidase MepM -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37173.77 Da        Isoelectric Point: 4.7818

>NTDB_id=774459 QUR98_RS11215 WP_000568519.1 2338153..2339163(+) (ruvB) [Escherichia coli strain VG38-53E1]
MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG
VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG
TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA
TTRAWNHFGITPPEMP

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=774459 QUR98_RS11215 WP_000568519.1 2338153..2339163(+) (ruvB) [Escherichia coli strain VG38-53E1]
ATGATTGAAGCAGACCGTCTGATTTCTGCCGGTACCACTTTGCCGGAAGATGTGGCAGATCGCGCCATTCGCCCTAAATT
ACTGGAAGAGTATGTTGGTCAGCCGCAGGTTCGTTCGCAGATGGAGATTTTCATCAAAGCAGCGAAACTGCGCGGCGATG
CCCTCGATCATCTATTGATTTTTGGTCCTCCGGGGTTGGGTAAAACTACGCTTGCCAATATTGTCGCCAATGAAATGGGC
GTTAATTTACGCACGACTTCTGGTCCGGTGCTGGAAAAGGCGGGCGATCTGGCAGCAATGCTCACTAACCTTGAACCACA
CGATGTACTGTTTATTGATGAGATCCACCGTCTTTCACCAGTGGTGGAAGAGGTGTTGTATCCGGCAATGGAAGATTACC
AACTGGATATCATGATTGGTGAAGGTCCGGCGGCACGCTCCATTAAAATTGATTTGCCGCCGTTTACCCTGATTGGTGCA
ACCACGCGCGCAGGTTCGCTGACATCACCGTTGCGCGATCGTTTTGGTATTGTGCAACGTCTGGAGTTTTATCAGGTGCC
GGATCTGCAATACATCGTCAGTCGCAGCGCACGCTTTATGGGGCTTGAGATGAGTGATGACGGCGCGCTGGAAGTTGCTC
GTCGTGCGCGCGGTACGCCACGTATTGCCAACCGTCTGCTGCGTCGAGTGCGTGATTTCGCCGAAGTGAAGCACGATGGC
ACCATCTCGGCAGATATCGCTGCTCAGGCGCTGGATATGTTGAATGTCGATGCTGAAGGTTTCGATTATATGGACCGCAA
ATTGTTGCTGGCGGTAATCGATAAGTTCTTTGGTGGGCCGGTAGGTCTGGATAACCTGGCGGCAGCCATTGGCGAAGAAC
GTGAAACCATTGAGGATGTACTGGAACCTTATTTGATTCAGCAAGGCTTTTTGCAGCGTACACCGCGTGGGCGTATGGCG
ACGACGCGGGCGTGGAATCACTTTGGCATAACGCCGCCAGAAATGCCGTAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)

RuvB AAA lid domain (AAA_lid_4)

(184-257)

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HA1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

60.486

97.917

0.592
  ruvB Streptococcus pneumoniae TIGR4

58.934

94.94

0.56
  ruvB Streptococcus pneumoniae R6

58.934

94.94

0.56
  ruvB Streptococcus pneumoniae D39

58.934

94.94

0.56
  ruvB Synechocystis sp. PCC 6803

53.251

96.131

0.512
  ruvB Helicobacter pylori 26695

52.038

94.94

0.494