Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   PG915_RS02855 Genome accession   NZ_CP115920
Coordinates   620715..621341 (-) Length   208 a.a.
NCBI ID   WP_353497785.1    Uniprot ID   A0AAU8BIQ0
Organism   Vibrio chaetopteri strain CB1-14     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 615715..626341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PG915_RS02845 (PG915_02840) aceF 616874..618769 (+) 1896 WP_353497783.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  PG915_RS02850 (PG915_02845) lpdA 619157..620584 (+) 1428 WP_353497784.1 dihydrolipoyl dehydrogenase -
  PG915_RS02855 (PG915_02850) opaR 620715..621341 (-) 627 WP_353497785.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  PG915_RS02860 (PG915_02855) hpt 621858..622388 (+) 531 WP_353497786.1 hypoxanthine phosphoribosyltransferase -
  PG915_RS02865 (PG915_02860) can 622446..623096 (-) 651 WP_353497787.1 carbonate dehydratase -
  PG915_RS02870 (PG915_02865) - 623330..624976 (+) 1647 WP_353497788.1 SulP family inorganic anion transporter -
  PG915_RS02875 (PG915_02870) - 625157..626077 (+) 921 WP_353497789.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23683.03 Da        Isoelectric Point: 5.5384

>NTDB_id=774446 PG915_RS02855 WP_353497785.1 620715..621341(-) (opaR) [Vibrio chaetopteri strain CB1-14]
MDSIVKRPRTRLSPQKRKLQLMEIALEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVCQYSNFLS
NTIDLDVNIKDNLANILDGVVDMVVEDCHWSKVWFEWSTSTRDEVWPLFVSSNKTSQALIENMFIKAIERGEVCPHHNPK
HLTSLFHGLCYSLFVEAMRTNDSDIVKSLTDCYMDMVCIYNNGEAHAS

Nucleotide


Download         Length: 627 bp        

>NTDB_id=774446 PG915_RS02855 WP_353497785.1 620715..621341(-) (opaR) [Vibrio chaetopteri strain CB1-14]
ATGGACTCTATAGTAAAAAGACCTAGGACTCGTCTGTCTCCACAAAAGCGTAAACTACAGCTTATGGAGATAGCGCTTGA
AGTATTTGCAAAGCGTGGCATTGGACGCGGGGGACACGCCGATATCGCTGAAATCGCACAGGTCTCGGTGGCAACAGTAT
TCAACTATTTCCCAACTCGTGAAGACTTGGTGGATGAAGTACTCAATCACGTCGTATGCCAGTACTCAAACTTTCTATCT
AACACGATTGATCTTGATGTGAACATCAAAGACAACTTGGCGAACATCCTAGATGGTGTGGTCGACATGGTGGTCGAAGA
TTGTCACTGGAGTAAAGTCTGGTTTGAGTGGAGCACATCGACACGTGATGAAGTTTGGCCGCTGTTTGTTAGCTCAAACA
AAACCAGCCAAGCTTTGATTGAAAACATGTTCATTAAAGCCATTGAACGCGGTGAAGTGTGCCCACACCACAATCCAAAA
CACTTAACTAGCCTATTCCATGGTCTTTGCTACTCACTATTTGTAGAAGCAATGCGCACTAACGATAGCGATATCGTAAA
ATCACTCACTGATTGCTATATGGACATGGTGTGTATTTACAACAACGGTGAAGCGCACGCATCTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

73.134

96.635

0.707
  hapR Vibrio cholerae C6706

69

96.154

0.663
  hapR Vibrio cholerae strain A1552

69

96.154

0.663