Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   OK782_RS10425 Genome accession   NZ_CP115904
Coordinates   1968692..1969087 (-) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain MS11 HL-1-22     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1963692..1974087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OK782_RS10405 (OK782_10405) rfbC 1963769..1964326 (+) 558 WP_003690171.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  OK782_RS10410 (OK782_10410) - 1964370..1966388 (-) 2019 WP_003690172.1 OPT family oligopeptide transporter -
  OK782_RS10415 (OK782_10415) dnaJ 1966583..1967704 (-) 1122 WP_003690173.1 molecular chaperone DnaJ -
  OK782_RS10420 (OK782_10420) - 1967838..1968167 (+) 330 Protein_2000 transposase -
  OK782_RS10425 (OK782_10425) comE 1968692..1969087 (-) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  OK782_RS10430 (OK782_10430) - 1969192..1969308 (-) 117 Protein_2002 competence protein ComE -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=774301 OK782_RS10425 WP_003703428.1 1968692..1969087(-) (comE) [Neisseria gonorrhoeae strain MS11 HL-1-22]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=774301 OK782_RS10425 WP_003703428.1 1968692..1969087(-) (comE) [Neisseria gonorrhoeae strain MS11 HL-1-22]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1