Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   QUC24_RS26780 Genome accession   NZ_CP128506
Coordinates   5801892..5802488 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain Fe11-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5796892..5807488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUC24_RS26760 (QUC24_26760) aroK 5798023..5798541 (-) 519 WP_003095833.1 shikimate kinase AroK -
  QUC24_RS26765 (QUC24_26765) pilQ 5798553..5800697 (-) 2145 WP_003146401.1 type 4a pilus secretin PilQ Machinery gene
  QUC24_RS26770 (QUC24_26770) comL/pilP 5800751..5801275 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  QUC24_RS26775 (QUC24_26775) pilO 5801272..5801895 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  QUC24_RS26780 (QUC24_26780) pilN 5801892..5802488 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  QUC24_RS26785 (QUC24_26785) pilM 5802488..5803552 (-) 1065 WP_034074518.1 type IV pilus assembly protein PilM Machinery gene
  QUC24_RS26790 (QUC24_26790) - 5803737..5806208 (+) 2472 WP_016562439.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=774294 QUC24_RS26780 WP_003095839.1 5801892..5802488(-) (pilN) [Pseudomonas aeruginosa strain Fe11-1]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=774294 QUC24_RS26780 WP_003095839.1 5801892..5802488(-) (pilN) [Pseudomonas aeruginosa strain Fe11-1]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369