Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   QUC24_RS26770 Genome accession   NZ_CP128506
Coordinates   5800751..5801275 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain Fe11-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5795751..5806275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUC24_RS26755 (QUC24_26755) aroB 5796867..5797973 (-) 1107 WP_003116138.1 3-dehydroquinate synthase -
  QUC24_RS26760 (QUC24_26760) aroK 5798023..5798541 (-) 519 WP_003095833.1 shikimate kinase AroK -
  QUC24_RS26765 (QUC24_26765) pilQ 5798553..5800697 (-) 2145 WP_003146401.1 type 4a pilus secretin PilQ Machinery gene
  QUC24_RS26770 (QUC24_26770) comL/pilP 5800751..5801275 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  QUC24_RS26775 (QUC24_26775) pilO 5801272..5801895 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  QUC24_RS26780 (QUC24_26780) pilN 5801892..5802488 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  QUC24_RS26785 (QUC24_26785) pilM 5802488..5803552 (-) 1065 WP_034074518.1 type IV pilus assembly protein PilM Machinery gene
  QUC24_RS26790 (QUC24_26790) - 5803737..5806208 (+) 2472 WP_016562439.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=774292 QUC24_RS26770 WP_003095836.1 5800751..5801275(-) (comL/pilP) [Pseudomonas aeruginosa strain Fe11-1]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=774292 QUC24_RS26770 WP_003095836.1 5800751..5801275(-) (comL/pilP) [Pseudomonas aeruginosa strain Fe11-1]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGTACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362