Detailed information NTG0774233

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PG902_RS21100
• Genome accession: NZ_CP115894
• Coordinates: 4335209..4336009 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain KP20
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4330209..4341009

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PG902_RS21065 (PG902_20995)	gspH	4330365..4330880 (+)	516	WP_038432091.1	type II secretion system minor pseudopilin GspH	-
PG902_RS21070 (PG902_21000)	gspI	4330877..4331242 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
PG902_RS21075 (PG902_21005)	gspJ	4331239..4331835 (+)	597	WP_004145893.1	type II secretion system minor pseudopilin GspJ	-
PG902_RS21080 (PG902_21010)	gspK	4331832..4332818 (+)	987	WP_004183041.1	type II secretion system minor pseudopilin GspK	-
PG902_RS21085 (PG902_21015)	gspL	4332805..4333998 (+)	1194	WP_038432093.1	type II secretion system protein GspL	-
PG902_RS21090 (PG902_21020)	-	4333991..4334476 (+)	486	WP_004145896.1	type II secretion system protein M	-
PG902_RS21095 (PG902_21025)	-	4334466..4335212 (+)	747	WP_038432094.1	type II secretion system protein N	-
PG902_RS21100 (PG902_21030)	pilD	4335209..4336009 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
PG902_RS21105 (PG902_21035)	hrpB	4336057..4338486 (-)	2430	WP_020317204.1	ATP-dependent helicase HrpB	-
PG902_RS21110 (PG902_21040)	thpR	4338559..4339095 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
PG902_RS21115 (PG902_21045)	sfsA	4339095..4339811 (+)	717	WP_004177390.1	DNA/RNA nuclease SfsA	-
PG902_RS21120 (PG902_21050)	dksA	4339974..4340429 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=774233 PG902_RS21100 WP_004145898.1 4335209..4336009(+) (pilD) [Klebsiella pneumoniae strain KP20]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=774233 PG902_RS21100 WP_004145898.1 4335209..4336009(+) (pilD) [Klebsiella pneumoniae strain KP20]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAACTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGTTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425