Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   PCM89_RS04540 Genome accession   NZ_CP115887
Coordinates   966954..967523 (-) Length   189 a.a.
NCBI ID   WP_000287265.1    Uniprot ID   A0A7U7EXU5
Organism   Staphylococcus aureus strain C308     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 961954..972523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCM89_RS04520 (PCM89_04520) - 963457..964815 (+) 1359 WP_000021865.1 TrkH family potassium uptake protein -
  PCM89_RS04525 (PCM89_04525) - 964954..966465 (+) 1512 WP_000414178.1 bifunctional metallophosphatase/5'-nucleotidase -
  PCM89_RS04540 (PCM89_04540) comK/comK1 966954..967523 (-) 570 WP_000287265.1 competence protein ComK Regulator
  PCM89_RS04545 (PCM89_04545) - 967733..967951 (+) 219 WP_000876826.1 IDEAL domain-containing protein -
  PCM89_RS04550 (PCM89_04550) - 968032..969018 (-) 987 WP_000668821.1 lipoate--protein ligase -
  PCM89_RS04555 (PCM89_04555) - 969217..969393 (+) 177 WP_000214898.1 YkvS family protein -
  PCM89_RS04560 (PCM89_04560) - 969408..970010 (+) 603 WP_001033867.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  PCM89_RS04565 (PCM89_04565) - 970245..970307 (+) 63 WP_228764722.1 hypothetical protein -
  PCM89_RS04570 (PCM89_04570) - 970954..971226 (+) 273 WP_075583734.1 lactococcin 972 family bacteriocin -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22601.83 Da        Isoelectric Point: 9.6091

>NTDB_id=774157 PCM89_RS04540 WP_000287265.1 966954..967523(-) (comK/comK1) [Staphylococcus aureus strain C308]
MYSQNIYVIRKGDMVIRPAFDDDDQRNGSEIIRFDKTRIQNPFKVQKIIERSCKFYGNTYLGKKAETNRITGISSKPPIL
LTPLFPTYFFPTHSDRQNENIWLNMHYIESIKELKNRKCKVTFINNESIILHVSYHSLWHQYNNSIFYYYMVDKQSRMIS
KNPDQPIDYNKATLNVFEALTRYSLFEDK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=774157 PCM89_RS04540 WP_000287265.1 966954..967523(-) (comK/comK1) [Staphylococcus aureus strain C308]
ATGTATTCTCAAAATATTTATGTGATACGCAAAGGAGACATGGTTATTCGACCAGCATTTGATGATGACGATCAAAGAAA
CGGTAGTGAAATAATTCGGTTTGACAAAACGCGTATTCAAAATCCTTTTAAAGTCCAGAAAATCATTGAACGCTCTTGCA
AATTTTATGGTAATACTTATCTTGGCAAGAAAGCAGAGACAAACCGCATTACTGGCATTTCTAGTAAACCACCTATTTTA
CTAACACCATTATTTCCAACTTATTTTTTCCCAACACATTCTGACAGACAAAATGAAAATATTTGGTTAAATATGCATTA
TATCGAAAGTATTAAAGAATTAAAAAATCGTAAATGTAAAGTGACATTTATTAATAATGAATCAATCATTCTTCATGTTT
CATACCACAGTTTATGGCATCAATATAACAATTCCATTTTTTACTATTACATGGTAGATAAACAATCTCGCATGATATCA
AAAAATCCCGACCAACCAATAGATTATAATAAAGCCACATTGAATGTGTTTGAAGCATTGACACGCTATTCTTTATTTGA
AGATAAATAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(5-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7EXU5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

100

100

1
  comK/comK1 Staphylococcus aureus N315

100

100

1