Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   PCM89_RS04405 Genome accession   NZ_CP115887
Coordinates   936455..937441 (+) Length   328 a.a.
NCBI ID   WP_000959286.1    Uniprot ID   A0AAX2MRT0
Organism   Staphylococcus aureus strain C308     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 931455..942441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCM89_RS04380 (PCM89_04380) - 932288..932797 (+) 510 Protein_856 transposase -
  PCM89_RS04385 (PCM89_04385) trpS 932823..933812 (-) 990 WP_000448941.1 tryptophan--tRNA ligase -
  PCM89_RS04390 (PCM89_04390) spxA 934107..934502 (+) 396 WP_000258001.1 transcriptional regulator SpxA -
  PCM89_RS04395 (PCM89_04395) tnpA 934714..935199 (+) 486 WP_000093392.1 IS200/IS605 family transposase -
  PCM89_RS04400 (PCM89_04400) mecA 935615..936334 (+) 720 WP_001217724.1 adaptor protein MecA -
  PCM89_RS04405 (PCM89_04405) coiA 936455..937441 (+) 987 WP_000959286.1 competence protein CoiA Machinery gene
  PCM89_RS04410 (PCM89_04410) pepF 937489..939297 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  PCM89_RS04415 (PCM89_04415) yjbH 939757..940563 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  PCM89_RS04420 (PCM89_04420) - 940586..940951 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  PCM89_RS04425 (PCM89_04425) - 941055..941648 (-) 594 WP_000224621.1 CYTH domain-containing protein -
  PCM89_RS04430 (PCM89_04430) - 941834..942181 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38770.45 Da        Isoelectric Point: 9.5881

>NTDB_id=774156 PCM89_RS04405 WP_000959286.1 936455..937441(+) (coiA) [Staphylococcus aureus strain C308]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSLFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKIIELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLLLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=774156 PCM89_RS04405 WP_000959286.1 936455..937441(+) (coiA) [Staphylococcus aureus strain C308]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTTTGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTTGCTGA
AAAAAGGAATGCCAAAATTATTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCCGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCTATTGAGTG
GCAATTACAAGTTGATTTATTGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAACCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

99.085

100

0.991
  coiA Staphylococcus aureus MW2

97.866

100

0.979