Detailed information NTG0774065

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: QTN46_RS14300
• Genome accession: NZ_CP128501
• Coordinates: 2642384..2643637 (-)
• Length: 417 a.a.
• NCBI ID: WP_013353081.1
• Uniprot ID: A0A9P1JIS4
• Organism: Bacillus amyloliquefaciens strain SRCM123386
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 2637384..2648637

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QTN46_RS14285 (QTN46_14285)	yihA	2637468..2638055 (-)	588	WP_013353078.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
QTN46_RS14290 (QTN46_14290)	lon	2638052..2640376 (-)	2325	WP_013353079.1	endopeptidase La	-
QTN46_RS14295 (QTN46_14295)	lonB	2640575..2642233 (-)	1659	WP_013353080.1	ATP-dependent protease LonB	-
QTN46_RS14300 (QTN46_14300)	clpX	2642384..2643637 (-)	1254	WP_013353081.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
QTN46_RS14305 (QTN46_14305)	tig	2643909..2645183 (-)	1275	WP_014470785.1	trigger factor	-
QTN46_RS14310 (QTN46_14310)	ddcA	2645400..2646404 (-)	1005	WP_289393784.1	DNA damage checkpoint antagonist DdcA	-
QTN46_RS14315 (QTN46_14315)	leuD	2646523..2647122 (-)	600	WP_013353084.1	3-isopropylmalate dehydratase small subunit	-
QTN46_RS14320 (QTN46_14320)	leuC	2647137..2648555 (-)	1419	WP_013353085.1	3-isopropylmalate dehydratase large subunit	-

Sequence

Protein

• Length: 417 a.a.
• Molecular weight: 45960.76 Da
• Isoelectric Point: 4.5137

>NTDB_id=774065 QTN46_RS14300 WP_013353081.1 2642384..2643637(-) (clpX) [Bacillus amyloliquefaciens strain SRCM123386]
MFKFNEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKDVPKPQEIREILNEYVIGQDQ
AKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILL
KLIQAADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI
LFICGGAFDGIEQIIKRRLGQKVIGFGSDNKVADLEKEELLSKVLPEDLLRFGLIPEFIGRLPVIASLEQLDETALVEIL
TKPKNALVKQYKKMLELDDVELDFEDEALSEIAKKAIERKTGARGLRSIIEGIMLDVMFDLPSRDDIEKCVITGATVADG
EAPRLVLKDGTVVKTSA

Nucleotide

• Length: 1254 bp

>NTDB_id=774065 QTN46_RS14300 WP_013353081.1 2642384..2643637(-) (clpX) [Bacillus amyloliquefaciens strain SRCM123386]
ATGTTTAAATTCAACGAGGAAAAAGGACAATTAAAATGCTCGTTCTGCGGAAAAACGCAAGATCAGGTTCGTAAGCTGGT
TGCAGGACCGGGTGTATATATATGCGACGAATGCATCGAGCTCTGTACAGAAATCGTAGAAGAAGAGCTGGGCACAGAAG
AAGAAGTCGAATTTAAAGACGTTCCGAAGCCGCAGGAAATCCGTGAGATTCTGAATGAATATGTCATCGGACAGGATCAG
GCGAAGAAATCACTTGCGGTTGCGGTATACAACCATTACAAACGCATCAACTCCAACAGTAAAGTGGATGATGTCGAGCT
TTCTAAAAGTAATATTTCATTAATCGGGCCGACTGGAAGCGGGAAAACACTTCTCGCCCAGACACTTGCGCGTATTCTGA
ACGTGCCGTTTGCGATCGCGGACGCTACATCTCTGACTGAAGCCGGATATGTCGGTGAGGACGTAGAAAACATTCTCCTC
AAACTGATTCAGGCAGCAGACTATGATGTGGAAAAAGCGGAAAAAGGCATTATTTATATCGATGAAATCGATAAAGTAGC
GCGTAAATCTGAAAACCCGTCCATCACACGTGACGTATCAGGCGAAGGCGTTCAGCAGGCGCTGCTGAAAATTCTTGAAG
GAACGGTTGCAAGCGTGCCGCCTCAAGGAGGGCGCAAACATCCTCATCAGGAATTCATTCAGATCGATACGACGAACATT
CTGTTCATTTGCGGGGGTGCATTTGACGGCATCGAACAAATCATTAAACGCCGTCTCGGACAAAAAGTCATCGGCTTCGG
CTCTGATAATAAAGTGGCAGACTTGGAAAAAGAAGAACTGCTTTCTAAAGTTCTTCCGGAAGACTTGCTTCGTTTCGGGC
TGATTCCTGAATTCATCGGCCGTCTTCCTGTCATTGCAAGCCTTGAGCAGCTTGACGAAACGGCACTGGTTGAAATTCTG
ACTAAACCTAAAAACGCACTCGTCAAACAATACAAGAAAATGTTAGAACTAGATGATGTCGAGCTTGATTTTGAAGACGA
GGCATTATCTGAAATTGCGAAAAAAGCGATCGAGCGAAAAACAGGCGCACGCGGCCTGCGTTCTATCATTGAGGGCATCA
TGCTTGACGTCATGTTTGATCTGCCGTCCCGCGATGACATTGAAAAATGTGTCATTACCGGAGCGACAGTGGCAGACGGT
GAAGCACCGCGTCTTGTATTAAAAGACGGCACTGTTGTTAAAACATCAGCGTAA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (311-389)

• AAA domain (Cdc48 subfamily) (AAA_2) (109-305)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

3D structure

• AlphaFold DB: A0A9P1JIS4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	68.01	95.204	0.647
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	59.158	96.882	0.573