Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QTN45_RS19625 Genome accession   NZ_CP128500
Coordinates   3803257..3803853 (-) Length   198 a.a.
NCBI ID   WP_003150697.1    Uniprot ID   A7Z0E4
Organism   Bacillus amyloliquefaciens strain SRCM123364     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3798257..3808853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN45_RS19615 (QTN45_19615) - 3802690..3802953 (-) 264 WP_013350740.1 pro-sigmaK processing inhibitor BofA family protein -
  QTN45_RS19620 (QTN45_19620) - 3803014..3803238 (-) 225 WP_013350739.1 YaaL family protein -
  QTN45_RS19625 (QTN45_19625) recR 3803257..3803853 (-) 597 WP_003150697.1 recombination protein RecR Machinery gene
  QTN45_RS19630 (QTN45_19630) - 3803868..3804191 (-) 324 WP_003150700.1 YbaB/EbfC family nucleoid-associated protein -
  QTN45_RS19635 (QTN45_19635) dnaX 3804216..3805907 (-) 1692 WP_289412600.1 DNA polymerase III subunit gamma/tau -
  QTN45_RS19645 (QTN45_19645) tadA 3806390..3806872 (-) 483 WP_013350737.1 tRNA adenosine(34) deaminase TadA -
  QTN45_RS19650 (QTN45_19650) - 3806994..3807506 (+) 513 WP_044051889.1 isochorismatase family cysteine hydrolase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21990.53 Da        Isoelectric Point: 5.3504

>NTDB_id=773965 QTN45_RS19625 WP_003150697.1 3803257..3803853(-) (recR) [Bacillus amyloliquefaciens strain SRCM123364]
MQYPEPISKLIDSFMKLPGIGPKTAVRLAFFVLGMKEDTVLDFAKALVNAKRNLTYCSICGHITDQDPCYICEDTRRDKS
VICVVQDPKDVIAMEKMKEYNGQYHVLHGAISPMDGIGPEDIKIPELLKRLQDDQVTEVILATNPNIEGEATAMYISRLL
KPSGIKLSRIAHGLPVGGDLEYADEVTLSKALEGRREL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=773965 QTN45_RS19625 WP_003150697.1 3803257..3803853(-) (recR) [Bacillus amyloliquefaciens strain SRCM123364]
ATGCAGTATCCTGAACCAATATCAAAGCTGATTGACAGCTTTATGAAATTGCCAGGGATCGGACCGAAAACAGCGGTTCG
TCTGGCTTTTTTTGTTCTAGGTATGAAAGAAGACACAGTATTGGATTTTGCTAAGGCGCTTGTCAATGCGAAGCGGAATC
TGACATATTGCTCGATTTGCGGACATATTACAGATCAGGACCCTTGTTATATATGCGAGGATACAAGAAGAGATAAGTCT
GTTATTTGTGTCGTGCAGGACCCTAAAGATGTTATTGCAATGGAGAAAATGAAGGAATATAACGGCCAGTATCATGTGCT
TCACGGCGCGATTTCTCCAATGGACGGCATCGGCCCGGAGGATATTAAGATTCCGGAACTGCTGAAGCGCCTTCAGGATG
ACCAAGTGACAGAAGTTATTCTCGCAACCAACCCTAATATTGAAGGGGAAGCAACAGCGATGTATATATCGAGGCTGTTA
AAGCCCTCAGGCATCAAGCTCTCCCGTATTGCCCACGGCCTGCCCGTCGGCGGCGATTTGGAATATGCTGATGAGGTCAC
TCTTTCAAAAGCGCTTGAAGGAAGACGTGAATTGTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(40-78)

Toprim domain (Toprim_4)

(80-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z0E4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

98.99

100

0.99
  recR Streptococcus pneumoniae R6

62.626

100

0.626
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

52.551

98.99

0.52