Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   QTN45_RS11990 Genome accession   NZ_CP128500
Coordinates   2369238..2370260 (-) Length   340 a.a.
NCBI ID   WP_013352157.1    Uniprot ID   A0A9P1JGM5
Organism   Bacillus amyloliquefaciens strain SRCM123364     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2364238..2375260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN45_RS11960 (QTN45_11960) - 2364744..2365625 (-) 882 WP_061573876.1 2-dehydropantoate 2-reductase -
  QTN45_RS11965 (QTN45_11965) - 2365788..2366270 (+) 483 WP_289412324.1 N-acetyltransferase -
  QTN45_RS11970 (QTN45_11970) gerR 2366311..2366886 (-) 576 WP_013352160.1 sporulation-specific transcriptional regulator GerR -
  QTN45_RS11975 (QTN45_11975) rpmF 2367043..2367222 (-) 180 WP_003154457.1 50S ribosomal protein L32 -
  QTN45_RS11980 (QTN45_11980) - 2367244..2367762 (-) 519 WP_013352159.1 DUF177 domain-containing protein -
  QTN45_RS11985 (QTN45_11985) - 2367970..2369217 (+) 1248 WP_013352158.1 nucleotidyltransferase -
  QTN45_RS11990 (QTN45_11990) sepM 2369238..2370260 (-) 1023 WP_013352157.1 SepM family pheromone-processing serine protease Regulator
  QTN45_RS11995 (QTN45_11995) - 2370266..2371045 (-) 780 WP_013352156.1 patatin-like phospholipase family protein -
  QTN45_RS12000 (QTN45_12000) ylbJ 2371223..2372449 (+) 1227 WP_014472570.1 sporulation integral membrane protein YlbJ -
  QTN45_RS12005 (QTN45_12005) coaD 2372467..2372949 (-) 483 WP_013352154.1 pantetheine-phosphate adenylyltransferase -
  QTN45_RS12010 (QTN45_12010) rsmD 2372954..2373508 (-) 555 WP_007409693.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  QTN45_RS12015 (QTN45_12015) - 2373807..2374079 (-) 273 WP_013352153.1 YlbG family protein -
  QTN45_RS12020 (QTN45_12020) ylbF 2374138..2374587 (-) 450 WP_013352152.1 YlbF family regulator Regulator
  QTN45_RS12025 (QTN45_12025) - 2374659..2374898 (-) 240 WP_003154475.1 YlbE-like family protein -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 37480.23 Da        Isoelectric Point: 9.5435

>NTDB_id=773909 QTN45_RS11990 WP_013352157.1 2369238..2370260(-) (sepM) [Bacillus amyloliquefaciens strain SRCM123364]
MKAKHFRWVFIILILLIAITFIKLPYYITQPGEASELRPLIKVDGGYPEKGSLSLMTVKVGPANPYTYLWAKVHPYDEIV
PDESIKEEGETDSDYMKRQLQMMKSSQENAVIAAYQKAGKQVKYSFNGIYASSVVSNMPAKGKIKVGDKIISADGKKYES
AEKLIDYISSKKAGEKVTFNIERDTKEKTVTLKLKSFPDDPKRAGIGVALYTDRNVKVKPDLHFSIENIGGPSAGLMMSL
EIYNQLTKPDETKGYNIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGAENSDYKNAVKTAKAIKSDMKIV
PVDTMQDALDYLDKLKVKST

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=773909 QTN45_RS11990 WP_013352157.1 2369238..2370260(-) (sepM) [Bacillus amyloliquefaciens strain SRCM123364]
ATGAAAGCAAAACATTTTCGCTGGGTGTTTATCATCCTGATCTTATTAATCGCTATTACATTTATTAAGCTTCCGTATTA
CATTACACAGCCGGGAGAAGCATCAGAGCTGAGACCGCTGATTAAGGTGGACGGAGGCTACCCTGAAAAAGGAAGCCTTT
CCTTGATGACTGTCAAAGTAGGCCCCGCCAATCCGTATACATATCTTTGGGCGAAGGTGCATCCTTACGATGAAATCGTC
CCTGATGAAAGCATAAAAGAAGAGGGCGAAACTGATTCAGACTATATGAAGCGCCAACTGCAGATGATGAAAAGCTCTCA
AGAAAACGCGGTCATTGCCGCTTATCAAAAAGCCGGCAAACAGGTAAAATACTCATTTAACGGCATTTACGCCAGCTCAG
TCGTCTCCAATATGCCGGCAAAAGGAAAAATAAAGGTCGGTGATAAAATCATCAGCGCGGACGGGAAAAAATATGAATCC
GCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGAGAAAAAGTAACGTTTAACATTGAACGTGACACGAAAGA
AAAGACAGTTACCCTTAAGCTGAAATCATTCCCGGACGATCCGAAAAGAGCCGGAATCGGCGTAGCATTATATACGGACC
GGAACGTGAAAGTGAAGCCGGATCTTCATTTCAGTATTGAAAACATCGGCGGGCCTTCTGCCGGTCTCATGATGTCTTTG
GAAATTTACAATCAGCTGACAAAACCTGACGAAACAAAAGGCTACAATATAGCCGGAACGGGAACAATCGACGTTGACGG
CAAGGTCGGACCGATTGGCGGAATCGATCAGAAAGTCGTCGCCGCAGACAAAGCGGGAAAAGATATTTTCTTTGCGCCGA
ACCAAAACGGAGCTGAAAACTCTGATTATAAAAATGCAGTAAAAACGGCGAAAGCGATTAAGTCCGATATGAAAATCGTT
CCTGTCGATACGATGCAGGACGCACTTGATTATTTGGATAAGCTGAAAGTAAAAAGCACCTGA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(230-330)

PDZ domain (PDZ_2)

(127-194)

Peptidase family M50 (Peptidase_M50)

(109-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JGM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

38.728

100

0.394