Detailed information NTG0773910

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PGO70_RS20820
• Genome accession: NZ_CP115831
• Coordinates: 4329846..4330646 (+)
• Length: 266 a.a.
• NCBI ID: WP_032446431.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain L4-FAA5
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4324846..4335646

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PGO70_RS20785 (PGO70_20780)	gspH	4325002..4325517 (+)	516	WP_032446426.1	type II secretion system minor pseudopilin GspH	-
PGO70_RS20790 (PGO70_20785)	gspI	4325514..4325879 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
PGO70_RS20795 (PGO70_20790)	gspJ	4325876..4326472 (+)	597	WP_032446428.1	type II secretion system minor pseudopilin GspJ	-
PGO70_RS20800 (PGO70_20795)	gspK	4326469..4327455 (+)	987	WP_004178610.1	type II secretion system minor pseudopilin GspK	-
PGO70_RS20805 (PGO70_20800)	gspL	4327442..4328635 (+)	1194	WP_032446429.1	type II secretion system protein GspL	-
PGO70_RS20810 (PGO70_20805)	-	4328628..4329113 (+)	486	WP_004183037.1	type II secretion system protein M	-
PGO70_RS20815 (PGO70_20810)	-	4329103..4329849 (+)	747	WP_032446430.1	type II secretion system protein N	-
PGO70_RS20820 (PGO70_20815)	pilD	4329846..4330646 (+)	801	WP_032446431.1	A24 family peptidase	Machinery gene
PGO70_RS20825 (PGO70_20820)	hrpB	4330694..4333123 (-)	2430	WP_032446433.1	ATP-dependent helicase HrpB	-
PGO70_RS20830 (PGO70_20825)	thpR	4333196..4333732 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
PGO70_RS20835 (PGO70_20830)	sfsA	4333732..4334448 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
PGO70_RS20840 (PGO70_20835)	dksA	4334611..4335066 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29401.06 Da
• Isoelectric Point: 8.8894

>NTDB_id=773910 PGO70_RS20820 WP_032446431.1 4329846..4330646(+) (pilD) [Klebsiella pneumoniae strain L4-FAA5]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLIELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=773910 PGO70_RS20820 WP_032446431.1 4329846..4330646(+) (pilD) [Klebsiella pneumoniae strain L4-FAA5]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGATCGAACTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (123-231)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.811	99.624	0.496
pilD	Vibrio campbellii strain DS40M4	46.545	100	0.481
pilD	Acinetobacter nosocomialis M2	46.388	98.872	0.459
pilD	Acinetobacter baumannii D1279779	45.627	98.872	0.451
pilD	Neisseria gonorrhoeae MS11	43.678	98.12	0.429