Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   QTN45_RS01825 Genome accession   NZ_CP128500
Coordinates   354678..354797 (-) Length   39 a.a.
NCBI ID   WP_021494790.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SRCM123364     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 349678..359797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN45_RS01785 (QTN45_01785) speE 350092..350922 (+) 831 WP_003151052.1 spermidine synthase -
  QTN45_RS01790 (QTN45_01790) speB 350982..351854 (+) 873 WP_101670746.1 agmatinase -
  QTN45_RS01795 (QTN45_01795) - 352007..352225 (+) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  QTN45_RS01800 (QTN45_01800) - 352816..353328 (-) 513 WP_014419132.1 stage II sporulation protein M -
  QTN45_RS01805 (QTN45_01805) - 353372..353791 (-) 420 WP_289412731.1 hypothetical protein -
  QTN45_RS01810 (QTN45_01810) - 353840..354025 (-) 186 WP_014419130.1 DUF4177 domain-containing protein -
  QTN45_RS01815 (QTN45_01815) - 354060..354263 (-) 204 WP_007407641.1 hypothetical protein -
  QTN45_RS01820 (QTN45_01820) - 354277..354480 (-) 204 WP_003151064.1 helix-turn-helix transcriptional regulator -
  QTN45_RS01825 (QTN45_01825) phrF 354678..354797 (-) 120 WP_021494790.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  QTN45_RS01830 (QTN45_01830) rapF 354781..355926 (-) 1146 WP_079979768.1 tetratricopeptide repeat protein Regulator
  QTN45_RS01835 (QTN45_01835) - 356218..356646 (+) 429 WP_003151069.1 DUF1934 family protein -
  QTN45_RS01840 (QTN45_01840) argS 356643..358313 (+) 1671 WP_017418711.1 arginine--tRNA ligase -
  QTN45_RS01845 (QTN45_01845) - 358448..359638 (+) 1191 WP_289412739.1 nitrate/nitrite transporter -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4266.10 Da        Isoelectric Point: 8.0195

>NTDB_id=773827 QTN45_RS01825 WP_021494790.1 354678..354797(-) (phrF) [Bacillus amyloliquefaciens strain SRCM123364]
MKLKYKLALTCLAIGTIFVSADIASAPEHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=773827 QTN45_RS01825 WP_021494790.1 354678..354797(-) (phrF) [Bacillus amyloliquefaciens strain SRCM123364]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTAGCGATAGGCACTATTTTTGTTTCAGCCGACATTGCAAGTGCACC
GGAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterProScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487
  phrF Bacillus subtilis subsp. subtilis str. 168

66.667

69.231

0.462