Detailed information NTG0077380

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: H7R79_RS02215
• Genome accession: NZ_AP022252
• Coordinates: 481467..482339 (-)
• Length: 290 a.a.
• NCBI ID: WP_130631561.1
• Uniprot ID: -
• Organism: Aeromonas hydrophila strain WP8-S18-ESBL-02
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 476467..487339

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H7R79_RS02190 (WP8S18E02_04170)	-	478203..479387 (+)	1185	WP_130631558.1	tetratricopeptide repeat protein	-
H7R79_RS02195 (WP8S18E02_04180)	mutT	479396..479809 (+)	414	WP_174843536.1	8-oxo-dGTP diphosphatase MutT	-
H7R79_RS02200 (WP8S18E02_04190)	yacG	479870..480064 (-)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
H7R79_RS02205 (WP8S18E02_04200)	zapD	480074..480796 (-)	723	WP_024945431.1	cell division protein ZapD	-
H7R79_RS02210 (WP8S18E02_04210)	coaE	480834..481448 (-)	615	WP_130631560.1	dephospho-CoA kinase	-
H7R79_RS02215 (WP8S18E02_04220)	pilD	481467..482339 (-)	873	WP_130631561.1	prepilin peptidase	Machinery gene
H7R79_RS02220 (WP8S18E02_04230)	pilC	482362..483603 (-)	1242	WP_130631562.1	type II secretion system F family protein	Machinery gene
H7R79_RS02225 (WP8S18E02_04240)	pilB	483719..485425 (-)	1707	WP_073351950.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
H7R79_RS02230	tapA	485429..485836 (-)	408	WP_130631563.1	type IVa pilus major pilin TapA	-
H7R79_RS02235 (WP8S18E02_04250)	-	486138..487274 (+)	1137	WP_021141311.1	ISAs1-like element ISAs12 family transposase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32514.80 Da
• Isoelectric Point: 6.7410

>NTDB_id=77380 H7R79_RS02215 WP_130631561.1 481467..482339(-) (pilD) [Aeromonas hydrophila strain WP8-S18-ESBL-02]
MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLGYFNPETQPQQEERYNLMVPRSACPHCSHA
ITAMENIPLLSWLWLKGRCRECQAPISARYPLVELLTALLSLVVAATFAPGWGLLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLTGGFAPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAFIGIGLILLRNHHQNKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide

• Length: 873 bp

>NTDB_id=77380 H7R79_RS02215 WP_130631561.1 481467..482339(-) (pilD) [Aeromonas hydrophila strain WP8-S18-ESBL-02]
ATGTTGCTGATCACTGACGTTTTTCACAGCCTGCCCTGGCTCTATTTCTCGCTGGTATTCCTCTTTTCTCTGATGATCGG
CAGTTTTCTCAACGTGGTCATCCACCGCCTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATATCTCGGCTATTTCA
ATCCAGAGACACAGCCGCAGCAGGAAGAGCGCTACAACCTGATGGTGCCGCGTTCTGCCTGCCCTCATTGCAGCCACGCC
ATCACGGCCATGGAGAACATCCCCCTGCTCAGCTGGCTCTGGCTCAAGGGGCGCTGCCGTGAATGCCAGGCCCCCATCTC
GGCCCGTTATCCTCTGGTGGAATTGCTGACGGCCCTGCTCTCGCTGGTCGTCGCCGCAACATTCGCACCGGGCTGGGGCT
TGCTGGCCGCCCTGTTGCTCACCTGGGTACTGGTGGCGCTCACTTTCATCGATCTGGACAAGATGCTGCTGCCGGATCAG
CTGACCCTGCCACTGCTGTGGGGTGGCCTGTTGTTCAATCTGACAGGGGGATTTGCGCCGCTGGCCGATGCGGTGATCGG
CGCCATGGCCGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGTTGCTGACCGGCAAGGAAGGGATGGGCTATG
GCGACTTCAAGCTGCTGGCGGCGCTGGGTGCCTGGCTCGGCTGGCAGGCACTGCCCATCGTGTTGCTGCTCTCGTCGCTG
GTTGGTGCTTTCATCGGAATTGGCCTCATTCTGCTGCGCAACCATCATCAGAATAAACCCATCCCCTTCGGCCCCTATCT
GGCCATCGCCGGCTGGATCGCGCTGCTGTGGGGCGATACCATCACCCGCTGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.324	98.966	0.607
pilD	Vibrio campbellii strain DS40M4	55.401	98.966	0.548
pilD	Acinetobacter baumannii D1279779	54.225	97.931	0.531
pilD	Acinetobacter nosocomialis M2	54.225	97.931	0.531
pilD	Neisseria gonorrhoeae MS11	48.718	94.138	0.459