Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   QR290_RS26720 Genome accession   NZ_CP128260
Coordinates   5920825..5921454 (-) Length   209 a.a.
NCBI ID   WP_007959929.1    Uniprot ID   A0ABM5ZJ23
Organism   Pseudomonas fluorescens strain PH.SM     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 5915825..5926454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR290_RS26700 (QR290_26700) - 5916123..5916947 (-) 825 WP_085709230.1 ABC transporter permease -
  QR290_RS26705 (QR290_26705) - 5916960..5918207 (-) 1248 WP_007959935.1 ABC transporter permease -
  QR290_RS26710 (QR290_26710) - 5918390..5919433 (-) 1044 WP_115079399.1 ABC transporter substrate-binding protein -
  QR290_RS26715 (QR290_26715) - 5919482..5920606 (-) 1125 WP_007959931.1 ABC transporter ATP-binding protein -
  QR290_RS26720 (QR290_26720) letA 5920825..5921454 (-) 630 WP_007959929.1 response regulator transcription factor Regulator
  QR290_RS26725 (QR290_26725) - 5921455..5923854 (-) 2400 WP_289203923.1 sensor histidine kinase -
  QR290_RS26730 (QR290_26730) - 5923928..5924917 (+) 990 WP_289203924.1 alpha/beta hydrolase family protein -
  QR290_RS26735 (QR290_26735) - 5924980..5925747 (-) 768 WP_115079403.1 TerB family tellurite resistance protein -
  QR290_RS26740 (QR290_26740) murU 5925749..5926420 (-) 672 WP_115079404.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 22757.55 Da        Isoelectric Point: 6.7602

>NTDB_id=773475 QR290_RS26720 WP_007959929.1 5920825..5921454(-) (letA) [Pseudomonas fluorescens strain PH.SM]
MIRVLVAEDHTIVREGIKQLIGLAKDLQVVGEASNGEQLLETLRNVPCEVVLLDISMPGVNGLEAIPRIRALNHPPAILV
LSMHDEAQMAARALKVGAAGYATKDSDPALLLTAIRKVAAGGRYIDPELADRMVFEVGLTDARPLHSLLSEREFSVFERL
AQGANVNDIAQQLALSSKTISTHKARLMQKLNITSLAELVKYAMEHKLL

Nucleotide


Download         Length: 630 bp        

>NTDB_id=773475 QR290_RS26720 WP_007959929.1 5920825..5921454(-) (letA) [Pseudomonas fluorescens strain PH.SM]
GTGATCCGTGTACTGGTAGCCGAAGACCACACCATCGTTCGCGAAGGCATCAAGCAATTGATCGGCCTGGCCAAGGATCT
GCAAGTGGTGGGGGAGGCGAGCAACGGCGAGCAGTTGCTGGAAACCCTGCGCAACGTGCCCTGTGAAGTGGTGTTGCTGG
ATATCTCGATGCCCGGGGTCAACGGGCTCGAAGCGATTCCGCGAATCCGCGCGCTGAACCATCCGCCGGCGATTCTGGTG
TTGTCGATGCACGACGAAGCGCAGATGGCCGCCCGGGCGCTGAAGGTCGGCGCCGCCGGGTATGCGACCAAGGACAGCGA
TCCGGCGCTGCTGCTGACGGCGATCCGCAAGGTCGCGGCCGGCGGGCGCTACATCGACCCGGAGCTGGCCGACCGCATGG
TCTTCGAGGTCGGCCTGACCGATGCGCGGCCGCTGCATTCGTTGCTGTCCGAGCGCGAGTTCTCGGTGTTCGAACGCCTG
GCGCAAGGCGCCAACGTCAACGACATCGCCCAGCAACTGGCCCTGAGCAGCAAGACCATCAGTACCCACAAGGCGCGGCT
GATGCAGAAACTCAACATCACCTCACTTGCCGAGCTGGTGAAGTACGCAATGGAACACAAGCTCCTCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-203)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

38.278

100

0.383
  letA Legionella pneumophila strain ERS1305867

38.278

100

0.383