Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   QR290_RS21185 Genome accession   NZ_CP128260
Coordinates   4741369..4741704 (-) Length   111 a.a.
NCBI ID   WP_127800949.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain PH.SM     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4736369..4746704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR290_RS21160 (QR290_21160) - 4737256..4737423 (+) 168 WP_007950938.1 DUF2897 family protein -
  QR290_RS21165 (QR290_21165) - 4737469..4738320 (-) 852 WP_289203529.1 DUF1989 domain-containing protein -
  QR290_RS21170 (QR290_21170) - 4738496..4739053 (+) 558 WP_289203530.1 TetR/AcrR family transcriptional regulator -
  QR290_RS21175 (QR290_21175) fabF 4739050..4740324 (-) 1275 WP_289203531.1 beta-ketoacyl-ACP synthase II -
  QR290_RS21180 (QR290_21180) - 4740357..4741151 (-) 795 WP_289203532.1 SDR family oxidoreductase -
  QR290_RS21185 (QR290_21185) comE1/comEA 4741369..4741704 (-) 336 WP_127800949.1 ComEA family DNA-binding protein Machinery gene
  QR290_RS21190 (QR290_21190) - 4741815..4743809 (-) 1995 WP_289205318.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  QR290_RS21195 (QR290_21195) - 4744225..4745202 (+) 978 WP_289203533.1 glycosyltransferase family 2 protein -
  QR290_RS21200 (QR290_21200) - 4745311..4746147 (+) 837 WP_192561935.1 ABC transporter permease -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 11638.27 Da        Isoelectric Point: 4.8146

>NTDB_id=773446 QR290_RS21185 WP_127800949.1 4741369..4741704(-) (comE1/comEA) [Pseudomonas fluorescens strain PH.SM]
MRTGYFYSLIFALLTSASIAAIAAPLASPEANKAPVVMDASATSENQKVDLNGADAATLQKELAGVGEAKAKAIVAYRET
NGPFASVDELLEVKGIGKAILDRNRDKLEVN

Nucleotide


Download         Length: 336 bp        

>NTDB_id=773446 QR290_RS21185 WP_127800949.1 4741369..4741704(-) (comE1/comEA) [Pseudomonas fluorescens strain PH.SM]
ATGCGTACCGGATATTTCTACTCCCTGATTTTTGCCTTGCTGACCAGCGCCTCGATTGCCGCCATTGCTGCACCTCTGGC
TTCTCCCGAAGCGAACAAGGCACCCGTGGTGATGGACGCCTCAGCCACTTCTGAAAATCAAAAGGTCGATCTGAACGGTG
CCGACGCGGCCACTCTGCAAAAGGAACTGGCAGGTGTGGGCGAGGCCAAGGCGAAAGCGATTGTTGCTTATCGTGAAACA
AACGGGCCGTTTGCGTCCGTGGATGAATTGTTGGAAGTGAAGGGTATCGGCAAGGCGATCCTGGATCGCAATCGCGACAA
GCTGGAAGTGAACTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(46-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

39.831

100

0.423
  comEA/comE1 Glaesserella parasuis strain SC1401

40.952

94.595

0.387