Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   QR290_RS16330 Genome accession   NZ_CP128260
Coordinates   3672267..3672908 (-) Length   213 a.a.
NCBI ID   WP_032829778.1    Uniprot ID   A0ABM5ZLX5
Organism   Pseudomonas fluorescens strain PH.SM     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3667267..3677908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR290_RS16285 (QR290_16285) - 3667795..3668025 (+) 231 WP_115078087.1 hypothetical protein -
  QR290_RS16290 (QR290_16290) - 3668146..3668376 (+) 231 WP_007958902.1 hypothetical protein -
  QR290_RS16295 (QR290_16295) - 3668461..3668745 (+) 285 WP_289203089.1 hypothetical protein -
  QR290_RS16300 (QR290_16300) - 3668824..3669117 (-) 294 WP_289205305.1 hypothetical protein -
  QR290_RS16320 (QR290_16320) pgsA 3669848..3670408 (-) 561 WP_085603312.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QR290_RS16325 (QR290_16325) uvrC 3670441..3672264 (-) 1824 WP_179694759.1 excinuclease ABC subunit UvrC -
  QR290_RS16330 (QR290_16330) letA 3672267..3672908 (-) 642 WP_032829778.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  QR290_RS16335 (QR290_16335) - 3673036..3673479 (-) 444 WP_115079955.1 GNAT family N-acetyltransferase -
  QR290_RS16340 (QR290_16340) - 3674127..3675197 (+) 1071 WP_289203090.1 3-deoxy-7-phosphoheptulonate synthase -
  QR290_RS16345 (QR290_16345) - 3675620..3676489 (+) 870 WP_289203091.1 triacylglycerol lipase -
  QR290_RS16350 (QR290_16350) - 3676587..3676868 (+) 282 WP_007952068.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23368.33 Da        Isoelectric Point: 6.2490

>NTDB_id=773429 QR290_RS16330 WP_032829778.1 3672267..3672908(-) (letA) [Pseudomonas fluorescens strain PH.SM]
MIRVLVVDDHDLVRTGITRMLADIDGLQVVGQAESGEESLIKARELKPDVVLMDVKMPGIGGLEATRKLLRSHPDIKVVA
VTVCEEDPFPTRLLQAGAAGYLTKGAGLPEMVQAIRLVFAGQRYISPQIAQQLAIKSFQPTNDSPFDALSEREIQIALMI
VGCQKVQIISDKLCLSPKTVNTYRYRIFEKLSISSDVELTLLAVRHGMVDASL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=773429 QR290_RS16330 WP_032829778.1 3672267..3672908(-) (letA) [Pseudomonas fluorescens strain PH.SM]
TTGATTAGGGTGCTAGTGGTCGACGACCATGATCTCGTTCGTACAGGCATTACACGGATGCTGGCCGATATCGATGGCTT
GCAGGTGGTAGGCCAGGCCGAGTCCGGGGAAGAATCCCTCATCAAGGCTCGTGAGTTGAAGCCTGACGTGGTGCTGATGG
ACGTCAAGATGCCTGGCATCGGCGGCCTGGAAGCCACGCGCAAACTGTTGCGAAGTCATCCCGACATCAAAGTGGTCGCG
GTCACCGTGTGTGAGGAAGATCCGTTTCCTACACGGTTGTTGCAGGCCGGTGCGGCGGGGTATCTGACCAAGGGCGCCGG
GTTGCCCGAAATGGTTCAGGCCATTCGCCTGGTGTTTGCCGGCCAGCGCTACATCAGCCCGCAAATTGCCCAGCAACTGG
CAATCAAATCCTTTCAGCCGACCAACGATTCACCGTTCGATGCGTTGTCGGAGCGGGAAATCCAGATTGCGTTGATGATT
GTCGGCTGTCAGAAGGTTCAGATCATTTCCGACAAATTATGTTTGTCGCCGAAAACCGTGAACACCTACCGCTACCGCAT
TTTCGAGAAGCTTTCGATCAGCAGCGATGTCGAACTGACGCTTCTTGCGGTACGTCACGGCATGGTTGATGCCAGCCTCT
GA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-203)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

56.667

98.592

0.559
  letA Legionella pneumophila strain ERS1305867

56.667

98.592

0.559