Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QR290_RS10590 Genome accession   NZ_CP128260
Coordinates   2320226..2320828 (+) Length   200 a.a.
NCBI ID   WP_007951652.1    Uniprot ID   Q3KFA5
Organism   Pseudomonas fluorescens strain PH.SM     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2315226..2325828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR290_RS10570 (QR290_10570) - 2315477..2316226 (-) 750 WP_289204848.1 transporter substrate-binding domain-containing protein -
  QR290_RS10575 (QR290_10575) dnaX 2316372..2318456 (+) 2085 WP_289204849.1 DNA polymerase III subunit gamma/tau -
  QR290_RS10580 (QR290_10580) - 2318524..2318862 (+) 339 WP_007951650.1 YbaB/EbfC family nucleoid-associated protein -
  QR290_RS10585 (QR290_10585) - 2319125..2320159 (+) 1035 WP_289204850.1 NADP-dependent oxidoreductase -
  QR290_RS10590 (QR290_10590) recR 2320226..2320828 (+) 603 WP_007951652.1 recombination mediator RecR Machinery gene
  QR290_RS10595 (QR290_10595) - 2320900..2322048 (+) 1149 WP_289204851.1 acyl-CoA dehydrogenase family protein -
  QR290_RS10600 (QR290_10600) - 2322176..2322724 (-) 549 WP_003223345.1 adenine phosphoribosyltransferase -
  QR290_RS10605 (QR290_10605) fnr 2322803..2323537 (-) 735 WP_289204852.1 fumarate/nitrate reduction transcriptional regulator Fnr -
  QR290_RS10610 (QR290_10610) - 2323693..2324175 (+) 483 WP_115077155.1 hypothetical protein -
  QR290_RS10615 (QR290_10615) hemN 2324172..2325554 (-) 1383 WP_011333280.1 oxygen-independent coproporphyrinogen III oxidase -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21517.72 Da        Isoelectric Point: 5.9987

>NTDB_id=773420 QR290_RS10590 WP_007951652.1 2320226..2320828(+) (recR) [Pseudomonas fluorescens strain PH.SM]
MSFSPLIRQLIDALRTLPGVGQKTAQRMALQLLERDRSGGTRLAQALSQAMEGVGHCRQCRTLTEDDLCPQCADTRRDDT
LLCVVEGPMDVYAVEQTGFRGRYFVLKGHLSPLDGLGPEAIGIPQLMARIEEAGTFTEVILATNPTVEGEATAHYIAQLL
QNKGLIASRIAHGVPLGGELELVDGGTLAHSFAGRKPISL

Nucleotide


Download         Length: 603 bp        

>NTDB_id=773420 QR290_RS10590 WP_007951652.1 2320226..2320828(+) (recR) [Pseudomonas fluorescens strain PH.SM]
ATGAGCTTCAGCCCATTGATTCGCCAACTGATCGACGCCCTGCGAACTTTGCCGGGCGTGGGTCAGAAAACTGCCCAGCG
TATGGCGTTGCAGTTGCTCGAACGTGACCGCAGTGGCGGTACGCGCCTGGCCCAGGCCTTGAGCCAGGCCATGGAAGGGG
TCGGGCACTGCCGCCAGTGCCGCACGCTGACCGAGGACGATCTGTGCCCGCAATGCGCCGACACCCGCCGCGACGACACG
CTGTTGTGCGTGGTGGAAGGGCCGATGGATGTCTACGCGGTCGAGCAGACCGGATTCCGTGGCCGTTACTTCGTGCTCAA
GGGGCACCTGTCGCCGCTGGACGGCCTGGGCCCGGAAGCCATCGGCATTCCGCAACTGATGGCGCGGATCGAAGAGGCGG
GCACCTTCACCGAAGTCATCCTTGCCACCAACCCGACCGTGGAAGGCGAAGCGACGGCGCACTACATCGCCCAGTTGCTG
CAGAACAAAGGTTTGATCGCCTCGCGCATCGCCCATGGCGTGCCGTTGGGCGGCGAACTGGAGTTGGTGGACGGCGGCAC
GCTGGCTCACTCGTTTGCCGGGCGCAAGCCGATTTCCCTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-78)

Toprim domain (Toprim_4)

(82-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3KFA5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

46

100

0.46
  recR Bacillus subtilis subsp. subtilis str. 168

46.193

98.5

0.455
  recR Streptococcus pneumoniae R6

36.735

98

0.36