Detailed information NTG0773415

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QR290_RS07070
• Genome accession: NZ_CP128260
• Coordinates: 1593503..1594510 (+)
• Length: 335 a.a.
• NCBI ID: WP_007954831.1
• Uniprot ID: A0A345RLF2
• Organism: Pseudomonas fluorescens strain PH.SM
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1588503..1599510

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QR290_RS07045 (QR290_07045)	ispF	1589361..1589834 (+)	474	WP_007954821.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QR290_RS07050 (QR290_07050)	truD	1589831..1590889 (+)	1059	WP_115076732.1	tRNA pseudouridine(13) synthase TruD	-
QR290_RS07055 (QR290_07055)	surE	1590877..1591626 (+)	750	WP_085748122.1	5'/3'-nucleotidase SurE	-
QR290_RS07060 (QR290_07060)	-	1591668..1592303 (+)	636	WP_170844894.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
QR290_RS07065 (QR290_07065)	-	1592515..1593396 (+)	882	WP_115076734.1	peptidoglycan DD-metalloendopeptidase family protein	-
QR290_RS07070 (QR290_07070)	rpoS	1593503..1594510 (+)	1008	WP_007954831.1	RNA polymerase sigma factor RpoS	Regulator
QR290_RS07075 (QR290_07075)	fdxA	1594999..1595322 (-)	324	WP_007908827.1	ferredoxin FdxA	-
QR290_RS07080 (QR290_07080)	mutS	1595486..1598068 (-)	2583	WP_289204599.1	DNA mismatch repair protein MutS	-
QR290_RS07085 (QR290_07085)	-	1598279..1599013 (+)	735	WP_115076737.1	XRE family transcriptional regulator	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38146.21 Da
• Isoelectric Point: 4.8877

>NTDB_id=773415 QR290_RS07070 WP_007954831.1 1593503..1594510(+) (rpoS) [Pseudomonas fluorescens strain PH.SM]
MALSKEVPEFDIDDEVLLMETGIDSDSMSNDEGAAPPSVRAKSKHSASLKQHKYIDYTRALDATQLYLNEIGFSPLLSPE
EEVHFARLSQSGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTI
ERAIMNQTRTIRLPIHVVKELNVYLRAARELTQKLDHEPSPEEIANLLEKPVGEVKRMLGLNERVSSVDVSLGPDSDKTL
LDTLTDDRPTDPCELLQDDDLSQSIDQWLSELTDKQREVVVRRFGLRGHESSTLEDVGLEIGLTRERVRQIQVEGLKRLR
EILEKNGLSSESLFQ

Nucleotide

• Length: 1008 bp

>NTDB_id=773415 QR290_RS07070 WP_007954831.1 1593503..1594510(+) (rpoS) [Pseudomonas fluorescens strain PH.SM]
ATGGCTCTCAGTAAAGAAGTGCCGGAGTTTGACATCGACGATGAGGTTCTCCTGATGGAGACCGGCATCGATTCGGATTC
GATGTCGAATGATGAAGGGGCTGCTCCACCTTCCGTTCGTGCCAAATCCAAACACTCCGCTTCGCTTAAGCAACACAAGT
ACATCGATTACACTCGGGCACTCGATGCCACGCAGCTGTACCTCAACGAAATCGGCTTTTCTCCACTGCTCTCTCCGGAA
GAAGAAGTTCATTTTGCGCGCTTGTCGCAAAGTGGCGACCCTGCCGGACGCAAGCGCATGATTGAAAGTAACCTGCGGCT
GGTGGTCAAAATCGCCCGGCGTTACGTCAATCGGGGGCTGTCGCTGCTGGATCTGATCGAAGAGGGCAACCTCGGACTGA
TCCGCGCGGTGGAAAAGTTCGATCCCGAGCGCGGCTTCCGCTTCTCGACCTACGCGACCTGGTGGATTCGTCAGACCATC
GAACGCGCGATCATGAATCAGACCCGGACCATCCGGTTGCCGATCCATGTGGTCAAGGAGCTCAACGTGTACCTGCGGGC
TGCACGGGAGCTGACGCAAAAGCTCGATCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAAAAACCGGTGGGCG
AGGTCAAGCGCATGCTGGGCCTGAACGAGCGGGTTTCTTCGGTCGACGTCTCGCTGGGTCCGGATTCGGATAAAACCCTG
CTCGACACCCTGACGGATGACCGTCCGACCGATCCATGTGAACTGCTGCAGGATGACGACCTGTCGCAGAGCATCGATCA
ATGGCTCTCGGAACTGACCGACAAGCAACGCGAGGTGGTCGTGCGCCGCTTCGGCCTGCGCGGCCACGAGAGCAGCACGC
TGGAAGATGTGGGCCTGGAGATCGGCCTGACCCGGGAACGGGTGAGACAGATCCAGGTGGAAGGCCTCAAACGCCTTCGG
GAAATTCTCGAGAAAAACGGCCTGTCGAGCGAGTCGCTGTTTCAATAA

Domains

Predicted by InterProScan.

• Sigma-70, region 4 (Sigma70_r4) (268-321)

• Sigma-70 region 3 (Sigma70_r3) (180-254)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (62-94)

• Sigma-70 region 2 (Sigma70_r2) (100-169)

3D structure

• AlphaFold DB: A0A345RLF2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	65.672	100	0.657