Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   O6P39_RS09065 Genome accession   NZ_CP115669
Coordinates   1931595..1932230 (+) Length   211 a.a.
NCBI ID   WP_275611021.1    Uniprot ID   -
Organism   Pseudomonas sp. PSE14     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1926595..1937230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6P39_RS09050 (O6P39_09050) - 1927227..1928474 (+) 1248 WP_275611018.1 lipoprotein-releasing ABC transporter permease subunit -
  O6P39_RS09055 (O6P39_09055) - 1928618..1929148 (-) 531 WP_275611019.1 DUF2062 domain-containing protein -
  O6P39_RS09060 (O6P39_09060) comA 1929313..1931523 (+) 2211 WP_275611020.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  O6P39_RS09065 (O6P39_09065) exbB 1931595..1932230 (+) 636 WP_275611021.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  O6P39_RS09070 (O6P39_09070) - 1932227..1932676 (+) 450 WP_275611022.1 biopolymer transporter ExbD -
  O6P39_RS09075 (O6P39_09075) lpxK 1932676..1933674 (+) 999 WP_275611023.1 tetraacyldisaccharide 4'-kinase -
  O6P39_RS09080 (O6P39_09080) - 1933729..1933914 (+) 186 WP_009621404.1 Trm112 family protein -
  O6P39_RS09085 (O6P39_09085) kdsB 1933919..1934683 (+) 765 WP_275611024.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  O6P39_RS09090 (O6P39_09090) - 1934683..1935147 (+) 465 WP_275611025.1 low molecular weight protein-tyrosine-phosphatase -
  O6P39_RS09095 (O6P39_09095) murB 1935144..1936163 (+) 1020 WP_275611026.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22973.25 Da        Isoelectric Point: 7.2806

>NTDB_id=773415 O6P39_RS09065 WP_275611021.1 1931595..1932230(+) (exbB) [Pseudomonas sp. PSE14]
MWELVKAGGWMMLPIMLSSVAAMAIIAERLWTLRLSRVAPPQLLGQVWKQIKDKKMNSQALKDLRASSPLGEILAAGLAN
SKHGREIMKECIEEAASRVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFSAFMGDGMANAPMLAGGISKALITTAS
GLIVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVTQGDREVDFAEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=773415 O6P39_RS09065 WP_275611021.1 1931595..1932230(+) (exbB) [Pseudomonas sp. PSE14]
GTGTGGGAACTGGTCAAAGCTGGCGGCTGGATGATGCTGCCGATCATGCTGAGCTCCGTCGCTGCCATGGCGATCATCGC
CGAACGTCTCTGGACCCTGCGCTTGAGCCGCGTGGCCCCGCCGCAACTGCTCGGCCAGGTATGGAAGCAGATCAAGGACA
AGAAGATGAACAGCCAGGCCCTGAAGGACCTGCGCGCATCGTCCCCGCTGGGTGAAATCCTGGCCGCCGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAAGCCGCATCCCGCGTCATCCATGAACTCGAGCGCTACCT
CAATGCGCTGGGCACCATCGCCGCCATGGCCCCGCTGCTCGGCCTGCTGGGTACCGTGTTCGGCATGATCCAGATCTTCA
GCGCCTTCATGGGCGACGGCATGGCCAACGCGCCGATGCTCGCCGGCGGTATCTCCAAGGCCCTGATCACCACCGCTTCT
GGCTTGATCGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGCCGCGTCGATGAACTGGTCATCGCCATGGA
GCAGGAAGCCATCAAGCTGGTGGAAGTGACCCAGGGCGATCGCGAAGTCGATTTCGCCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81