Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   OK783_RS08620 Genome accession   NZ_CP115654
Coordinates   1650021..1650410 (-) Length   129 a.a.
NCBI ID   WP_225577445.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FA1090 N-1-60     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1645021..1655410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OK783_RS08580 (OK783_08580) - 1645324..1645569 (-) 246 WP_003689849.1 hypothetical protein -
  OK783_RS08585 (OK783_08585) - 1645681..1646109 (+) 429 WP_020997399.1 CopD family protein -
  OK783_RS08590 (OK783_08590) - 1646121..1646597 (+) 477 WP_003689851.1 CYTH domain-containing protein -
  OK783_RS08595 (OK783_08595) - 1646627..1647115 (-) 489 WP_003689852.1 dihydrofolate reductase -
  OK783_RS08600 (OK783_08600) aroG 1647183..1648238 (-) 1056 WP_003689853.1 3-deoxy-7-phosphoheptulonate synthase AroG -
  OK783_RS08605 (OK783_08605) - 1648400..1648627 (-) 228 WP_153707886.1 hypothetical protein -
  OK783_RS08610 (OK783_08610) - 1648855..1649151 (+) 297 WP_003689859.1 hypothetical protein -
  OK783_RS08615 (OK783_08615) - 1649148..1649387 (+) 240 WP_003689861.1 membrane protein -
  OK783_RS08620 (OK783_08620) comE 1650021..1650410 (-) 390 WP_225577445.1 helix-hairpin-helix domain-containing protein Machinery gene
  OK783_RS08625 (OK783_08625) - 1650515..1650631 (-) 117 Protein_1659 competence protein ComE -

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 13597.35 Da        Isoelectric Point: 10.8280

>NTDB_id=773288 OK783_RS08620 WP_225577445.1 1650021..1650410(-) (comE) [Neisseria gonorrhoeae strain FA1090 N-1-60]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAIAEYRA
QNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 390 bp        

>NTDB_id=773288 OK783_RS08620 WP_225577445.1 1650021..1650410(-) (comE) [Neisseria gonorrhoeae strain FA1090 N-1-60]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCCATTGCGGAATACCGCGCG
CAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCTGAAAGA
CCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

98.473

100

1
  comE Neisseria gonorrhoeae MS11

98.473

100

1
  comE Neisseria gonorrhoeae MS11

98.473

100

1
  comE Neisseria gonorrhoeae MS11

98.473

100

1