Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   OK783_RS06610 Genome accession   NZ_CP115654
Coordinates   1257220..1257609 (-) Length   129 a.a.
NCBI ID   WP_225577445.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FA1090 N-1-60     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1255619..1256272 1257220..1257609 flank 948


Gene organization within MGE regions


Location: 1255619..1257609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OK783_RS06600 (OK783_06600) - 1255619..1256272 (+) 654 WP_010951236.1 IS1595 family transposase -
  OK783_RS06605 (OK783_06605) - 1256546..1256869 (+) 324 Protein_1274 hypothetical protein -
  OK783_RS06610 (OK783_06610) comE 1257220..1257609 (-) 390 WP_225577445.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 13597.35 Da        Isoelectric Point: 10.8280

>NTDB_id=773281 OK783_RS06610 WP_225577445.1 1257220..1257609(-) (comE) [Neisseria gonorrhoeae strain FA1090 N-1-60]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAIAEYRA
QNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 390 bp        

>NTDB_id=773281 OK783_RS06610 WP_225577445.1 1257220..1257609(-) (comE) [Neisseria gonorrhoeae strain FA1090 N-1-60]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCCATTGCGGAATACCGCGCG
CAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCTGAAAGA
CCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

98.473

100

1
  comE Neisseria gonorrhoeae MS11

98.473

100

1
  comE Neisseria gonorrhoeae MS11

98.473

100

1
  comE Neisseria gonorrhoeae MS11

98.473

100

1