Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   OK783_RS02360 Genome accession   NZ_CP115654
Coordinates   449263..449874 (+) Length   203 a.a.
NCBI ID   WP_010951047.1    Uniprot ID   Q5F9E3
Organism   Neisseria gonorrhoeae strain FA1090 N-1-60     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 444263..454874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OK783_RS02335 (OK783_02335) - 444539..445121 (-) 583 Protein_456 superoxide dismutase -
  OK783_RS02340 (OK783_02340) dnaB 445285..446691 (+) 1407 WP_010951043.1 replicative DNA helicase -
  OK783_RS02345 (OK783_02345) pilH 446999..447664 (+) 666 WP_010951044.1 GspH/FimT family pseudopilin Machinery gene
  OK783_RS02350 (OK783_02350) pilV 447696..448307 (+) 612 WP_010951045.1 type IV pilus modification protein PilV Machinery gene
  OK783_RS02355 (OK783_02355) pilJ 448304..449284 (+) 981 WP_010951046.1 PilW family protein Machinery gene
  OK783_RS02360 (OK783_02360) pilK 449263..449874 (+) 612 WP_010951047.1 pilus assembly PilX family protein Machinery gene
  OK783_RS02365 (OK783_02365) pilL 449876..450349 (+) 474 WP_025456309.1 PilX family type IV pilin Machinery gene
  OK783_RS02370 (OK783_02370) - 450419..450727 (-) 309 WP_010951048.1 AzlD family protein -
  OK783_RS02375 (OK783_02375) - 450724..451435 (-) 712 Protein_464 AzlC family ABC transporter permease -
  OK783_RS02380 (OK783_02380) dut 451601..452053 (+) 453 WP_010951049.1 dUTP diphosphatase -
  OK783_RS02385 (OK783_02385) dapC 452125..453312 (+) 1188 WP_003706584.1 succinyldiaminopimelate transaminase -
  OK783_RS02390 (OK783_02390) yaaA 453624..454403 (+) 780 WP_003706583.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 21966.90 Da        Isoelectric Point: 8.0862

>NTDB_id=773271 OK783_RS02360 WP_010951047.1 449263..449874(+) (pilK) [Neisseria gonorrhoeae strain FA1090 N-1-60]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYAA
DSKVTFSENCEKGLCTAVNVRTNNNGSEEAFGNIVVQGKPAVEAVKRSCPAKSGKNSTDLCIDNKGMEYNKGAAGVSKMP
RYIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=773271 OK783_RS02360 WP_010951047.1 449263..449874(+) (pilK) [Neisseria gonorrhoeae strain FA1090 N-1-60]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGCGGGAGGGCGAATTTCAGGTTTTGGATTTGGAATATGCTGCG
GACAGTAAGGTTACGTTTAGCGAAAACTGTGAAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATAATAATGGTAG
TGAAGAGGCTTTTGGCAATATCGTGGTGCAAGGCAAGCCCGCCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGACCTGTGCATTGACAATAAAGGGATGGAATATAATAAAGGCGCGGCAGGCGTCAGCAAAATGCCG
CGCTATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5F9E3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

92.611

100

0.926