Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   OK783_RS02345 Genome accession   NZ_CP115654
Coordinates   446999..447664 (+) Length   221 a.a.
NCBI ID   WP_010951044.1    Uniprot ID   Q5F9E6
Organism   Neisseria gonorrhoeae strain FA1090 N-1-60     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 441999..452664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OK783_RS02320 (OK783_02320) cysT 442123..442952 (-) 830 Protein_453 sulfate ABC transporter permease subunit CysT -
  OK783_RS02325 (OK783_02325) - 443138..443470 (+) 333 WP_003687908.1 hypothetical protein -
  OK783_RS02330 (OK783_02330) - 443800..444309 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  OK783_RS02335 (OK783_02335) - 444539..445121 (-) 583 Protein_456 superoxide dismutase -
  OK783_RS02340 (OK783_02340) dnaB 445285..446691 (+) 1407 WP_010951043.1 replicative DNA helicase -
  OK783_RS02345 (OK783_02345) pilH 446999..447664 (+) 666 WP_010951044.1 GspH/FimT family pseudopilin Machinery gene
  OK783_RS02350 (OK783_02350) pilV 447696..448307 (+) 612 WP_010951045.1 type IV pilus modification protein PilV Machinery gene
  OK783_RS02355 (OK783_02355) pilJ 448304..449284 (+) 981 WP_010951046.1 PilW family protein Machinery gene
  OK783_RS02360 (OK783_02360) pilK 449263..449874 (+) 612 WP_010951047.1 pilus assembly PilX family protein Machinery gene
  OK783_RS02365 (OK783_02365) pilL 449876..450349 (+) 474 WP_025456309.1 PilX family type IV pilin Machinery gene
  OK783_RS02370 (OK783_02370) - 450419..450727 (-) 309 WP_010951048.1 AzlD family protein -
  OK783_RS02375 (OK783_02375) - 450724..451435 (-) 712 Protein_464 AzlC family ABC transporter permease -
  OK783_RS02380 (OK783_02380) dut 451601..452053 (+) 453 WP_010951049.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24687.02 Da        Isoelectric Point: 8.6176

>NTDB_id=773268 OK783_RS02345 WP_010951044.1 446999..447664(+) (pilH) [Neisseria gonorrhoeae strain FA1090 N-1-60]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPVQVKKDGASN
NRCDFSKKGWGMLAFGDKNGNKEYDGDVADVFLRSVVLNDDINDKRIDYAFNHIAFGSSQPTADRVVWTFNQNGTFGYTT
DQHLTERSSFFYSDGYIQIVLTDARAVSDADRKFRSAVVLIDSSGRVEVCRKNDTRAVCKH

Nucleotide


Download         Length: 666 bp        

>NTDB_id=773268 OK783_RS02345 WP_010951044.1 446999..447664(+) (pilH) [Neisseria gonorrhoeae strain FA1090 N-1-60]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TTTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTGCGTCCAAC
AATAGATGTGACTTCAGCAAGAAGGGGTGGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGAATATGACGGCGA
TGTGGCGGATGTTTTCCTCCGCAGCGTGGTATTGAATGATGATATCAATGATAAGCGGATTGATTATGCCTTCAACCATA
TCGCTTTCGGTTCGTCTCAGCCGACCGCCGACCGTGTAGTTTGGACGTTCAATCAAAACGGGACGTTCGGTTATACGACA
GACCAGCATCTTACAGAGCGATCCAGCTTTTTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAGGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGTCGTAAAAACG
ATACGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(44-205)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5F9E6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

90.498

100

0.905