Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   PF555_RS02015 Genome accession   NZ_CP115645
Coordinates   440813..441295 (+) Length   160 a.a.
NCBI ID   WP_001046416.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2022CK-00371     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 435813..446295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF555_RS02005 (PF555_02005) pilX 436116..436934 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  PF555_RS02010 (PF555_02010) pilY1 436946..440800 (+) 3855 WP_024432273.1 PilC/PilY family type IV pilus protein Machinery gene
  PF555_RS02015 (PF555_02015) pilY2 440813..441295 (+) 483 WP_001046416.1 type IV pilin protein Machinery gene
  PF555_RS02020 (PF555_02020) pilE 441292..441717 (+) 426 WP_000788339.1 type IV pilin protein Machinery gene
  PF555_RS02025 (PF555_02025) rpsP 441864..442115 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  PF555_RS02030 (PF555_02030) rimM 442135..442683 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  PF555_RS02035 (PF555_02035) trmD 442729..443469 (+) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  PF555_RS02040 (PF555_02040) rplS 443677..444045 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  PF555_RS02045 (PF555_02045) - 444098..445039 (-) 942 WP_086223958.1 triacylglycerol lipase -
  PF555_RS02050 (PF555_02050) - 445154..446188 (-) 1035 WP_024432274.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17533.80 Da        Isoelectric Point: 8.4817

>NTDB_id=773223 PF555_RS02015 WP_001046416.1 440813..441295(+) (pilY2) [Acinetobacter baumannii strain 2022CK-00371]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGGTTTCNTCETNSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=773223 PF555_RS02015 WP_001046416.1 440813..441295(+) (pilY2) [Acinetobacter baumannii strain 2022CK-00371]
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCCGTTGATAATGATTGTGGTGGTACGACTACTTGTAATACATGTGAAACGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

95

100

0.95
  comE Acinetobacter baylyi ADP1

41.279

100

0.444