Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   PF555_RS01875 Genome accession   NZ_CP115645
Coordinates   408061..408801 (+) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain 2022CK-00371     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 403061..413801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF555_RS01860 (PF555_01860) ponA 403648..406203 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  PF555_RS01865 (PF555_01865) pilM 406365..407423 (+) 1059 WP_031950501.1 pilus assembly protein PilM Machinery gene
  PF555_RS01870 (PF555_01870) pilN 407423..408064 (+) 642 WP_000201225.1 PilN domain-containing protein Machinery gene
  PF555_RS01875 (PF555_01875) pilO 408061..408801 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  PF555_RS01880 (PF555_01880) pilP 408812..409339 (+) 528 WP_000695069.1 pilus assembly protein PilP Machinery gene
  PF555_RS01885 (PF555_01885) pilQ 409402..411567 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  PF555_RS01890 (PF555_01890) aroK 411579..412148 (+) 570 WP_000643712.1 shikimate kinase AroK -
  PF555_RS01895 (PF555_01895) aroB 412177..413259 (+) 1083 WP_001194249.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=773214 PF555_RS01875 WP_000076101.1 408061..408801(+) (pilO) [Acinetobacter baumannii strain 2022CK-00371]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=773214 PF555_RS01875 WP_000076101.1 408061..408801(+) (pilO) [Acinetobacter baumannii strain 2022CK-00371]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTATGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTGCCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTAGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683