Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PF553_RS17335 Genome accession   NZ_CP115643
Coordinates   3583380..3584015 (+) Length   211 a.a.
NCBI ID   WP_000472266.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2022CK-00317     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3578380..3589015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF553_RS17320 (PF553_17320) adeT2 3579440..3580426 (-) 987 WP_000712906.1 putative multidrug efflux protein AdeT2 -
  PF553_RS17325 (PF553_17325) - 3580506..3581321 (-) 816 WP_000547774.1 NAD(P)H-binding protein -
  PF553_RS17330 (PF553_17330) recG 3581342..3583387 (+) 2046 WP_000204949.1 ATP-dependent DNA helicase RecG -
  PF553_RS17335 (PF553_17335) comF 3583380..3584015 (+) 636 WP_000472266.1 phosphoribosyltransferase family protein Machinery gene
  PF553_RS17340 (PF553_17340) - 3584018..3584419 (-) 402 WP_000849704.1 NUDIX domain-containing protein -
  PF553_RS17345 (PF553_17345) - 3584434..3585015 (-) 582 WP_001084314.1 TIGR00730 family Rossman fold protein -
  PF553_RS17350 (PF553_17350) - 3585173..3586186 (+) 1014 WP_000888321.1 CorA family divalent cation transporter -
  PF553_RS17355 (PF553_17355) - 3586256..3586543 (-) 288 WP_000250997.1 STAS domain-containing protein -
  PF553_RS17360 (PF553_17360) - 3586555..3587196 (-) 642 WP_001093907.1 ABC transporter substrate-binding protein -
  PF553_RS17365 (PF553_17365) - 3587223..3587903 (-) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  PF553_RS17370 (PF553_17370) mlaE 3587903..3588679 (-) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24602.82 Da        Isoelectric Point: 9.5740

>NTDB_id=773196 PF553_RS17335 WP_000472266.1 3583380..3584015(+) (comF) [Acinetobacter baumannii strain 2022CK-00317]
MFKFLNPQYLFHLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQIL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALCQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=773196 PF553_RS17335 WP_000472266.1 3583380..3584015(+) (comF) [Acinetobacter baumannii strain 2022CK-00317]
ATGTTTAAGTTTTTAAACCCCCAGTATCTTTTTCATTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATATTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGCCACTACGCCTATCCAATTAACCGGATCATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAATCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCCAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTATG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

98.578

100

0.986
  comF Acinetobacter baumannii D1279779

97.63

100

0.976