Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   PF550_RS16960 Genome accession   NZ_CP115641
Coordinates   3537684..3538157 (-) Length   157 a.a.
NCBI ID   WP_001214065.1    Uniprot ID   N9K1Q3
Organism   Acinetobacter baumannii strain 2022CK-00251     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3532684..3543157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF550_RS16945 (PF550_16945) pilX 3535313..3536131 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  PF550_RS16950 (PF550_16950) pilW 3536128..3537129 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  PF550_RS16955 (PF550_16955) pilV 3537130..3537690 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  PF550_RS16960 (PF550_16960) fimU 3537684..3538157 (-) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  PF550_RS16965 (PF550_16965) ispH 3538327..3539277 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  PF550_RS16970 (PF550_16970) gmk 3539400..3540029 (+) 630 WP_000015937.1 guanylate kinase -
  PF550_RS16975 (PF550_16975) rpoZ 3540102..3540380 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  PF550_RS16980 (PF550_16980) - 3540419..3540548 (+) 130 Protein_3309 hypothetical protein -
  PF550_RS16985 (PF550_16985) - 3540588..3542693 (+) 2106 WP_001117589.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.43 Da        Isoelectric Point: 8.5355

>NTDB_id=773156 PF550_RS16960 WP_001214065.1 3537684..3538157(-) (fimU) [Acinetobacter baumannii strain 2022CK-00251]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=773156 PF550_RS16960 WP_001214065.1 3537684..3538157(-) (fimU) [Acinetobacter baumannii strain 2022CK-00251]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTGGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

100

100

1