Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   PF550_RS09985 Genome accession   NZ_CP115641
Coordinates   2054826..2055206 (+) Length   126 a.a.
NCBI ID   WP_000836911.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2022CK-00251     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2049826..2060206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF550_RS09955 (PF550_09955) kdsB 2050729..2051490 (+) 762 WP_000680694.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PF550_RS09960 (PF550_09960) - 2051502..2052482 (+) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  PF550_RS09965 (PF550_09965) - 2052494..2052835 (+) 342 WP_001183024.1 PilZ domain-containing protein -
  PF550_RS09970 (PF550_09970) - 2052853..2053626 (+) 774 WP_000497298.1 TatD family hydrolase -
  PF550_RS09975 (PF550_09975) - 2053664..2054272 (+) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  PF550_RS09980 (PF550_09980) - 2054282..2054836 (+) 555 WP_000841373.1 type II secretion system protein -
  PF550_RS09985 (PF550_09985) xcpV 2054826..2055206 (+) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  PF550_RS09990 (PF550_09990) xcpW 2055206..2055907 (+) 702 WP_000594572.1 type II secretion system minor pseudopilin GspJ Machinery gene
  PF550_RS09995 (PF550_09995) gspK 2055907..2056866 (+) 960 WP_000301463.1 type II secretion system minor pseudopilin GspK -
  PF550_RS10000 (PF550_10000) - 2057096..2057692 (+) 597 WP_000908453.1 6-carboxytetrahydropterin synthase -
  PF550_RS10005 (PF550_10005) ung 2057743..2058456 (+) 714 WP_001177528.1 uracil-DNA glycosylase -
  PF550_RS10010 (PF550_10010) - 2058453..2059577 (+) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  PF550_RS10015 (PF550_10015) tadA 2059584..2060087 (+) 504 WP_001997771.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13975.20 Da        Isoelectric Point: 9.8004

>NTDB_id=773141 PF550_RS09985 WP_000836911.1 2054826..2055206(+) (xcpV) [Acinetobacter baumannii strain 2022CK-00251]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=773141 PF550_RS09985 WP_000836911.1 2054826..2055206(+) (xcpV) [Acinetobacter baumannii strain 2022CK-00251]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

100

100

1