Detailed information NTG0773142

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: PF550_RS09990
• Genome accession: NZ_CP115641
• Coordinates: 2055206..2055907 (+)
• Length: 233 a.a.
• NCBI ID: WP_000594572.1
• Uniprot ID: A0A009IN88
• Organism: Acinetobacter baumannii strain 2022CK-00251
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2050206..2060907

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PF550_RS09955 (PF550_09955)	kdsB	2050729..2051490 (+)	762	WP_000680694.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
PF550_RS09960 (PF550_09960)	-	2051502..2052482 (+)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
PF550_RS09965 (PF550_09965)	-	2052494..2052835 (+)	342	WP_001183024.1	PilZ domain-containing protein	-
PF550_RS09970 (PF550_09970)	-	2052853..2053626 (+)	774	WP_000497298.1	TatD family hydrolase	-
PF550_RS09975 (PF550_09975)	-	2053664..2054272 (+)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
PF550_RS09980 (PF550_09980)	-	2054282..2054836 (+)	555	WP_000841373.1	type II secretion system protein	-
PF550_RS09985 (PF550_09985)	xcpV	2054826..2055206 (+)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
PF550_RS09990 (PF550_09990)	xcpW	2055206..2055907 (+)	702	WP_000594572.1	type II secretion system minor pseudopilin GspJ	Machinery gene
PF550_RS09995 (PF550_09995)	gspK	2055907..2056866 (+)	960	WP_000301463.1	type II secretion system minor pseudopilin GspK	-
PF550_RS10000 (PF550_10000)	-	2057096..2057692 (+)	597	WP_000908453.1	6-carboxytetrahydropterin synthase	-
PF550_RS10005 (PF550_10005)	ung	2057743..2058456 (+)	714	WP_001177528.1	uracil-DNA glycosylase	-
PF550_RS10010 (PF550_10010)	-	2058453..2059577 (+)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
PF550_RS10015 (PF550_10015)	tadA	2059584..2060087 (+)	504	WP_001997771.1	tRNA adenosine(34) deaminase TadA	-
PF550_RS10020 (PF550_10020)	-	2060157..2060600 (+)	444	WP_001246676.1	SRPBCC family protein	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26613.59 Da
• Isoelectric Point: 9.5501

>NTDB_id=773142 PF550_RS09990 WP_000594572.1 2055206..2055907(+) (xcpW) [Acinetobacter baumannii strain 2022CK-00251]
MIKNKYIHIRSFAARLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=773142 PF550_RS09990 WP_000594572.1 2055206..2055907(+) (xcpW) [Acinetobacter baumannii strain 2022CK-00251]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTGCTGCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCCAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATAGATAA
TCAAATTCTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GGTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

3D structure

• AlphaFold DB: A0A009IN88

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.142	100	0.991