Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   QRT07_RS12640 Genome accession   NZ_CP127846
Coordinates   2712281..2713009 (+) Length   242 a.a.
NCBI ID   WP_005460312.1    Uniprot ID   Q87S66
Organism   Vibrio parahaemolyticus strain VP16     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2707281..2718009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRT07_RS12625 (QRT07_12625) clpC 2707716..2710289 (-) 2574 WP_005460310.1 ATP-dependent chaperone ClpB Regulator
  QRT07_RS12630 (QRT07_12630) pgeF 2710437..2711165 (-) 729 WP_005460314.1 peptidoglycan editing factor PgeF -
  QRT07_RS12635 (QRT07_12635) rluD 2711167..2712144 (-) 978 WP_005460300.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QRT07_RS12640 (QRT07_12640) comL 2712281..2713009 (+) 729 WP_005460312.1 outer membrane protein assembly factor BamD Machinery gene
  QRT07_RS12645 (QRT07_12645) - 2713144..2714625 (+) 1482 WP_322618950.1 lytic transglycosylase F -
  QRT07_RS12650 (QRT07_12650) raiA 2714956..2715282 (+) 327 WP_005468590.1 ribosome-associated translation inhibitor RaiA -
  QRT07_RS12655 (QRT07_12655) pheA 2715526..2716704 (+) 1179 WP_025636552.1 prephenate dehydratase -
  QRT07_RS12660 (QRT07_12660) yjjX 2716729..2717262 (+) 534 WP_031810198.1 inosine/xanthosine triphosphatase -
  QRT07_RS12665 (QRT07_12665) trpR 2717311..2717622 (-) 312 WP_020904197.1 trp operon repressor -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 27848.79 Da        Isoelectric Point: 5.8151

>NTDB_id=773053 QRT07_RS12640 WP_005460312.1 2712281..2713009(+) (comL) [Vibrio parahaemolyticus strain VP16]
MKRQTLTGLLAVSLLFGCASKEEIVPDVPPSELYADAQVSLQSGNWLSAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFMRLNPTHEKMDWVLYMRGLSHMAQDRNFMHDLFSIDRSDRDPEPVKKAFDDFKKLLQRYPNSPYAED
AQKRMVALKNRLANYDLATADFYLRREAWIAAINRSQELQKSFPDTEAARKSLEIQLEAYKQLQLEDAVARTEALIKLNP
VK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=773053 QRT07_RS12640 WP_005460312.1 2712281..2713009(+) (comL) [Vibrio parahaemolyticus strain VP16]
ATGAAACGTCAGACTTTAACAGGCCTTTTAGCGGTATCTCTTCTGTTTGGATGTGCAAGCAAAGAAGAAATCGTTCCTGA
TGTGCCACCTTCGGAACTGTATGCAGACGCACAAGTCTCACTTCAAAGTGGCAACTGGCTTTCTGCGATTGAGAAACTGG
AAGCGTTAGACTCACGTTACCCATTTGGTGCCTACTCTGAACAGGTGCAACTTGACCTTATTTACGCATACTACAAAAAC
GACGATCTAGCGTTAGGCTTAGCAACCATCTCTCGCTTTATGCGCCTAAACCCTACCCATGAAAAAATGGACTGGGTGCT
TTACATGCGTGGCCTGAGCCACATGGCTCAAGATCGTAACTTTATGCACGACCTGTTTAGCATCGATCGTAGCGACCGCG
ACCCAGAGCCCGTGAAAAAAGCATTTGATGACTTTAAGAAGCTGCTTCAACGTTATCCAAACAGCCCATATGCGGAAGAT
GCACAAAAACGCATGGTGGCCTTGAAAAACCGCTTAGCGAATTACGATTTAGCTACCGCTGATTTTTACCTTCGCCGTGA
AGCATGGATCGCTGCCATTAACCGTAGCCAAGAGCTTCAAAAATCATTCCCTGATACAGAAGCAGCTCGCAAATCGTTAG
AAATTCAGCTGGAAGCCTACAAGCAGCTGCAACTAGAAGATGCCGTTGCAAGAACAGAAGCGCTCATTAAGCTAAATCCT
GTCAAATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87S66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

41.25

99.174

0.409
  comL Neisseria gonorrhoeae MS11

40.833

99.174

0.405