Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   QRS93_RS08400 Genome accession   NZ_CP127842
Coordinates   1709131..1710165 (-) Length   344 a.a.
NCBI ID   WP_015017341.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain TPCH-F37     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1704131..1715165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRS93_RS08365 (QRS93_08365) - 1704755..1705057 (-) 303 WP_015017337.1 YlxQ-related RNA-binding protein -
  QRS93_RS08370 (QRS93_08370) - 1705050..1705346 (-) 297 WP_003057040.1 YlxR family protein -
  QRS93_RS08375 (QRS93_08375) nusA 1705362..1706519 (-) 1158 WP_003057051.1 transcription termination factor NusA -
  QRS93_RS08380 (QRS93_08380) rimP 1706662..1707156 (-) 495 WP_042357979.1 ribosome maturation factor RimP -
  QRS93_RS08390 (QRS93_08390) trmB 1707640..1708275 (-) 636 WP_003052470.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  QRS93_RS08395 (QRS93_08395) - 1708275..1709066 (-) 792 WP_003052472.1 cell cycle regulator CcrZ -
  QRS93_RS08400 (QRS93_08400) pptB 1709131..1710165 (-) 1035 WP_015017341.1 ABC transporter permease Regulator
  QRS93_RS08405 (QRS93_08405) pptA 1710168..1710893 (-) 726 WP_003057032.1 ABC transporter ATP-binding protein Regulator
  QRS93_RS08410 (QRS93_08410) - 1710965..1711384 (+) 420 WP_003057067.1 HIT family protein -
  QRS93_RS08415 (QRS93_08415) - 1711381..1711710 (+) 330 WP_003057072.1 hypothetical protein -
  QRS93_RS08420 (QRS93_08420) - 1711868..1713136 (-) 1269 WP_042357980.1 LCP family protein -
  QRS93_RS08425 (QRS93_08425) - 1713148..1713669 (-) 522 WP_003057063.1 GNAT family N-acetyltransferase -
  QRS93_RS08430 (QRS93_08430) tsaE 1713662..1714105 (-) 444 WP_041789229.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40194.42 Da        Isoelectric Point: 10.2471

>NTDB_id=772957 QRS93_RS08400 WP_015017341.1 1709131..1710165(-) (pptB) [Streptococcus dysgalactiae subsp. equisimilis strain TPCH-F37]
MKALFLKRRQDFQKQQSKYLRYVFNDHFVLVLMFLFGFCLVQYSQLLKHFPSNHWPIWLFLMVGMLLLLHLGSVATYLEE
PDHHFLLPKEEAVVAHIKQAERSALVIWGCLQTAILIFLYPIFNRLGFSLVTFALLLLGLLALKRLLLGYKVRHFLKKDG
LDWEKAIAFESNRKQAILKFYSLFTNVKGISTKVKKRSYLNPLLKLVKENSKHLWLTLYLKAFLRSSDYLGLFLRLLLLS
SLALLFISNAYLSVALALVFNYLILFQLLSLYHHYDYHYMTSLYPENHQGKRANLLTFLRGLSCLILVINLLLCHSLEKA
LILVAVMGVITLFYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=772957 QRS93_RS08400 WP_015017341.1 1709131..1710165(-) (pptB) [Streptococcus dysgalactiae subsp. equisimilis strain TPCH-F37]
ATGAAAGCATTATTTCTGAAACGCCGTCAAGACTTTCAAAAACAACAGAGCAAATACCTGCGCTATGTCTTTAATGACCA
TTTTGTCTTGGTCCTGATGTTTTTGTTTGGTTTTTGTTTGGTGCAATACAGCCAGTTATTGAAGCATTTTCCTAGTAATC
ATTGGCCTATATGGCTCTTTCTCATGGTGGGGATGCTGTTATTGCTTCACTTGGGCTCGGTGGCAACTTATTTAGAAGAG
CCTGATCACCATTTTCTACTTCCGAAAGAAGAAGCTGTGGTTGCTCATATTAAACAAGCTGAACGCTCTGCCCTTGTAAT
TTGGGGCTGTTTACAGACAGCTATCCTCATCTTTTTATATCCGATCTTCAATCGCCTAGGCTTCTCCTTAGTTACTTTTG
CTCTTTTACTTTTGGGATTACTAGCTCTTAAACGACTCCTTTTGGGGTATAAAGTAAGACACTTTTTAAAGAAAGATGGA
CTGGATTGGGAAAAAGCCATTGCTTTTGAGAGTAATCGTAAACAGGCTATCTTAAAGTTTTATTCTCTTTTCACAAATGT
TAAGGGAATTTCCACAAAGGTTAAGAAAAGATCTTATTTAAATCCTCTTCTAAAATTGGTAAAAGAAAATAGTAAGCACC
TCTGGCTAACGCTCTATTTAAAAGCTTTTTTACGAAGTTCAGACTATTTAGGACTCTTTTTACGCTTATTATTATTGAGT
TCCCTAGCCTTGCTGTTTATTTCTAACGCTTACCTATCAGTGGCTTTAGCCTTGGTCTTTAATTATTTGATTCTTTTTCA
ATTGTTGTCTCTTTACCACCATTACGATTACCACTACATGACTAGTCTTTATCCAGAGAATCATCAAGGGAAGCGGGCGA
ATCTACTGACTTTTTTGAGAGGATTAAGTTGTCTGATATTAGTTATCAACCTCCTGCTCTGCCATTCTTTAGAAAAAGCC
CTTATTTTAGTAGCGGTCATGGGAGTTATTACGCTTTTCTACCTCCCTTATAAGTTGAAGAAGATAATTGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(156-327)

Bacterial ABC transporter protein EcsB (EcsB)

(2-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

46.802

100

0.468
  pptB Streptococcus salivarius strain HSISS4

46.512

100

0.465