Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QRO24_RS07690 Genome accession   NZ_CP127829
Coordinates   1599589..1600797 (-) Length   402 a.a.
NCBI ID   WP_335793447.1    Uniprot ID   -
Organism   Gallibacterium anatis strain OH/Ck/12965/20     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1594589..1605797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRO24_RS07655 (QRO24_07610) fdxH 1595183..1596094 (+) 912 WP_409025544.1 formate dehydrogenase subunit beta -
  QRO24_RS07660 (QRO24_07615) - 1596097..1596756 (+) 660 WP_013746615.1 formate dehydrogenase subunit gamma -
  QRO24_RS07665 (QRO24_07620) fdhE 1596758..1597681 (+) 924 WP_039094142.1 formate dehydrogenase accessory protein FdhE -
  QRO24_RS07670 (QRO24_07625) - 1597747..1598019 (-) 273 WP_039133889.1 GNAT family N-acetyltransferase -
  QRO24_RS07675 (QRO24_07630) yacG 1598105..1598323 (-) 219 WP_018345915.1 DNA gyrase inhibitor YacG -
  QRO24_RS07680 (QRO24_07635) coaE 1598313..1598945 (-) 633 WP_409025545.1 dephospho-CoA kinase -
  QRO24_RS07685 (QRO24_07640) - 1598960..1599592 (-) 633 WP_409025546.1 prepilin peptidase -
  QRO24_RS07690 (QRO24_07645) pilC 1599589..1600797 (-) 1209 WP_335793447.1 type II secretion system F family protein Machinery gene
  QRO24_RS07695 (QRO24_07650) pilB 1600813..1602222 (-) 1410 WP_018345911.1 GspE/PulE family protein Machinery gene
  QRO24_RS07700 (QRO24_07655) pilA 1602239..1602700 (-) 462 WP_335793446.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  QRO24_RS07705 (QRO24_07660) ampD 1602805..1603359 (+) 555 WP_264779690.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  QRO24_RS07710 (QRO24_07665) - 1603446..1603781 (+) 336 WP_013746603.1 hypothetical protein -
  QRO24_RS07715 (QRO24_07670) - 1603890..1605284 (+) 1395 WP_335793445.1 chloride channel protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 45789.00 Da        Isoelectric Point: 9.7258

>NTDB_id=772853 QRO24_RS07690 WP_335793447.1 1599589..1600797(-) (pilC) [Gallibacterium anatis strain OH/Ck/12965/20]
MPEYRWKGKDQFGNSVKGVLIADDREQARQRLFAQGIFLSSLNKNWQFFSTLTLEKQAEFLLQFALLLQAEIPLKPALQM
LQESCDSTSLYQLIGRCLTALNSGFSLSTALKNEKQFLSEQEWQLLYSGEISAQLAKVMKQLADNKLRQLKLRQQMKKIM
FYPLMMLSVSMLLTVLLLLFIVPKFADLYDQQQHALPLITQVLLQSSQFLQNYLWQLLTVFVVGIVALRRCYLMFPSLRR
QLLKLACLVPSIQRLYLQLQQIQFYTILSSMLNSGITLQQSLATFVPQSGYQRSRAATESILAIEAQQCLQSLQAGQRFS
SGLSSRFIPYQAKQMIIIGENSGNLVQMLHYLAEQSQQNLSNQVEVFSKLLEPILMLIIGSIIGVVIAGMYLPIFNMGNV
VL

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=772853 QRO24_RS07690 WP_335793447.1 1599589..1600797(-) (pilC) [Gallibacterium anatis strain OH/Ck/12965/20]
ATGCCGGAATATCGTTGGAAAGGAAAAGATCAATTTGGTAATAGCGTCAAAGGGGTATTGATTGCGGACGATCGGGAACA
GGCACGTCAACGCCTTTTTGCACAAGGGATCTTTTTATCCTCATTAAATAAAAATTGGCAATTTTTCTCCACACTAACAT
TGGAGAAACAAGCTGAATTTTTATTGCAGTTCGCATTATTGTTGCAGGCAGAGATACCGTTGAAACCGGCGTTGCAGATG
TTACAGGAAAGTTGTGATTCAACCTCTTTATACCAACTGATAGGGCGGTGCTTAACCGCATTGAACAGTGGTTTTTCATT
ATCAACGGCATTAAAAAATGAAAAGCAATTTTTATCGGAACAGGAGTGGCAATTGTTATACAGCGGTGAAATCAGCGCAC
AATTGGCAAAGGTAATGAAACAATTAGCGGATAATAAATTGCGACAACTAAAGTTACGTCAGCAGATGAAAAAAATAATG
TTTTATCCGTTAATGATGTTGTCGGTGTCAATGTTATTAACGGTGTTATTGCTGCTCTTTATTGTGCCTAAATTTGCCGA
TTTATATGATCAACAACAGCACGCCTTACCGTTGATTACACAAGTTTTATTACAGAGCTCGCAATTTTTGCAAAATTATC
TGTGGCAATTATTGACGGTATTTGTCGTGGGCATTGTGGCGTTACGGCGGTGTTATCTGATGTTTCCTTCATTACGTCGG
CAATTATTGAAATTGGCTTGCTTAGTGCCGTCAATTCAGCGGCTTTATTTGCAGTTACAACAAATTCAGTTTTATACCAT
TCTCTCTTCAATGTTAAATTCAGGCATAACCTTGCAACAGAGTTTAGCTACCTTTGTGCCTCAATCCGGTTATCAACGAA
GCCGAGCAGCAACAGAATCCATTTTAGCGATTGAAGCACAGCAATGTTTACAGAGCTTGCAGGCAGGGCAACGATTTTCT
TCAGGGTTGAGCAGTCGCTTTATTCCCTATCAGGCAAAACAGATGATTATTATCGGTGAAAATAGCGGCAATTTGGTGCA
GATGTTGCACTATTTAGCGGAACAGAGCCAACAAAATTTATCAAATCAGGTGGAGGTGTTTTCTAAATTATTGGAGCCGA
TACTAATGTTAATAATCGGCTCGATTATTGGTGTGGTTATTGCCGGTATGTATCTGCCGATTTTTAATATGGGCAATGTG
GTTTTATGA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein F (T2SSF)

(264-393)

Type II secretion system (T2SS), protein F (T2SSF)

(60-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae Rd KW20

36.118

100

0.366
  pilC Haemophilus influenzae 86-028NP

35.872

100

0.363