Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   PF449_RS08750 Genome accession   NZ_CP115623
Coordinates   1821956..1822336 (+) Length   126 a.a.
NCBI ID   WP_000836911.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2022CK-00340     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1816956..1827336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF449_RS08720 (PF449_08720) kdsB 1817859..1818620 (+) 762 WP_000680701.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PF449_RS08725 (PF449_08725) - 1818632..1819612 (+) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  PF449_RS08730 (PF449_08730) - 1819624..1819965 (+) 342 WP_001183024.1 PilZ domain-containing protein -
  PF449_RS08735 (PF449_08735) - 1819983..1820756 (+) 774 WP_000497298.1 TatD family hydrolase -
  PF449_RS08740 (PF449_08740) - 1820794..1821402 (+) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  PF449_RS08745 (PF449_08745) - 1821412..1821966 (+) 555 WP_000841367.1 type II secretion system protein -
  PF449_RS08750 (PF449_08750) xcpV 1821956..1822336 (+) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  PF449_RS08755 (PF449_08755) xcpW 1822336..1823037 (+) 702 WP_000594580.1 type II secretion system minor pseudopilin GspJ Machinery gene
  PF449_RS08760 (PF449_08760) gspK 1823037..1823996 (+) 960 WP_031960447.1 type II secretion system minor pseudopilin GspK -
  PF449_RS08765 (PF449_08765) - 1824226..1824822 (+) 597 WP_000908453.1 6-carboxytetrahydropterin synthase -
  PF449_RS08770 (PF449_08770) ung 1824873..1825586 (+) 714 WP_001177528.1 uracil-DNA glycosylase -
  PF449_RS08775 (PF449_08775) - 1825583..1826707 (+) 1125 WP_109067466.1 enoyl-CoA hydratase/isomerase family protein -
  PF449_RS08780 (PF449_08780) tadA 1826714..1827217 (+) 504 WP_031960449.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13975.20 Da        Isoelectric Point: 9.8004

>NTDB_id=772848 PF449_RS08750 WP_000836911.1 1821956..1822336(+) (xcpV) [Acinetobacter baumannii strain 2022CK-00340]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=772848 PF449_RS08750 WP_000836911.1 1821956..1822336(+) (xcpV) [Acinetobacter baumannii strain 2022CK-00340]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACTAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

100

100

1