Detailed information NTG0772849

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: PF449_RS08755
• Genome accession: NZ_CP115623
• Coordinates: 1822336..1823037 (+)
• Length: 233 a.a.
• NCBI ID: WP_000594580.1
• Uniprot ID: A0A836YMN8
• Organism: Acinetobacter baumannii strain 2022CK-00340
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1817336..1828037

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PF449_RS08720 (PF449_08720)	kdsB	1817859..1818620 (+)	762	WP_000680701.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
PF449_RS08725 (PF449_08725)	-	1818632..1819612 (+)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
PF449_RS08730 (PF449_08730)	-	1819624..1819965 (+)	342	WP_001183024.1	PilZ domain-containing protein	-
PF449_RS08735 (PF449_08735)	-	1819983..1820756 (+)	774	WP_000497298.1	TatD family hydrolase	-
PF449_RS08740 (PF449_08740)	-	1820794..1821402 (+)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
PF449_RS08745 (PF449_08745)	-	1821412..1821966 (+)	555	WP_000841367.1	type II secretion system protein	-
PF449_RS08750 (PF449_08750)	xcpV	1821956..1822336 (+)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
PF449_RS08755 (PF449_08755)	xcpW	1822336..1823037 (+)	702	WP_000594580.1	type II secretion system minor pseudopilin GspJ	Machinery gene
PF449_RS08760 (PF449_08760)	gspK	1823037..1823996 (+)	960	WP_031960447.1	type II secretion system minor pseudopilin GspK	-
PF449_RS08765 (PF449_08765)	-	1824226..1824822 (+)	597	WP_000908453.1	6-carboxytetrahydropterin synthase	-
PF449_RS08770 (PF449_08770)	ung	1824873..1825586 (+)	714	WP_001177528.1	uracil-DNA glycosylase	-
PF449_RS08775 (PF449_08775)	-	1825583..1826707 (+)	1125	WP_109067466.1	enoyl-CoA hydratase/isomerase family protein	-
PF449_RS08780 (PF449_08780)	tadA	1826714..1827217 (+)	504	WP_031960449.1	tRNA adenosine(34) deaminase TadA	-
PF449_RS08785 (PF449_08785)	-	1827287..1827730 (+)	444	WP_031960450.1	SRPBCC family protein	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26673.64 Da
• Isoelectric Point: 9.5501

>NTDB_id=772849 PF449_RS08755 WP_000594580.1 1822336..1823037(+) (xcpW) [Acinetobacter baumannii strain 2022CK-00340]
MIKNKYIHIRSFSSRLAARSSSARLTRVSGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=772849 PF449_RS08755 WP_000594580.1 1822336..1823037(+) (xcpW) [Acinetobacter baumannii strain 2022CK-00340]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTTCTTCTCGTCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGTCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAAATTATCCCTTTATCCGCAAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

3D structure

• AlphaFold DB: A0A836YMN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	98.712	100	0.987