Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PF364_RS16875 Genome accession   NZ_CP115621
Coordinates   3511356..3511991 (+) Length   211 a.a.
NCBI ID   WP_031961350.1    Uniprot ID   A0A836M0W8
Organism   Acinetobacter baumannii strain 2022CK-00480     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3506356..3516991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF364_RS16860 (PF364_16860) adeT2 3507416..3508402 (-) 987 WP_192898083.1 putative multidrug efflux protein AdeT2 -
  PF364_RS16865 (PF364_16865) - 3508482..3509297 (-) 816 WP_000547774.1 NAD(P)H-binding protein -
  PF364_RS16870 (PF364_16870) recG 3509318..3511363 (+) 2046 WP_016686247.1 ATP-dependent DNA helicase RecG -
  PF364_RS16875 (PF364_16875) comF 3511356..3511991 (+) 636 WP_031961350.1 phosphoribosyltransferase family protein Machinery gene
  PF364_RS16880 (PF364_16880) - 3511994..3512395 (-) 402 WP_000849705.1 NUDIX domain-containing protein -
  PF364_RS16885 (PF364_16885) - 3512410..3512991 (-) 582 WP_001084310.1 TIGR00730 family Rossman fold protein -
  PF364_RS16890 (PF364_16890) - 3513149..3514162 (+) 1014 WP_000888321.1 CorA family divalent cation transporter -
  PF364_RS16895 (PF364_16895) - 3514232..3514519 (-) 288 WP_000250997.1 STAS domain-containing protein -
  PF364_RS16900 (PF364_16900) - 3514531..3515172 (-) 642 WP_001093907.1 ABC transporter substrate-binding protein -
  PF364_RS16905 (PF364_16905) - 3515199..3515879 (-) 681 WP_031961351.1 outer membrane lipid asymmetry maintenance protein MlaD -
  PF364_RS16910 (PF364_16910) mlaE 3515879..3516655 (-) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24601.73 Da        Isoelectric Point: 9.7140

>NTDB_id=772817 PF364_RS16875 WP_031961350.1 3511356..3511991(+) (comF) [Acinetobacter baumannii strain 2022CK-00480]
MFKFLNPQYLFHLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALNQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=772817 PF364_RS16875 WP_031961350.1 3511356..3511991(+) (comF) [Acinetobacter baumannii strain 2022CK-00480]
ATGTTTAAGTTTTTAAACCCCCAGTATCTTTTTCATTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATATTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGCCACTACGCCTATCCAATTAACCGGATCATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCCAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACCCAAGAAAAACGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTGAA
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A836M0W8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

99.052

100

0.991
  comF Acinetobacter baumannii D1279779

98.104

100

0.981