Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   QQ475_RS18215 Genome accession   NZ_CP127493
Coordinates   3766740..3767477 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain PS00260.4     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3761740..3772477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQ475_RS18200 (QQ475_18160) clpC 3762194..3764767 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  QQ475_RS18205 (QQ475_18165) yfiH 3764897..3765628 (-) 732 WP_000040129.1 purine nucleoside phosphorylase YfiH -
  QQ475_RS18210 (QQ475_18170) rluD 3765625..3766605 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QQ475_RS18215 (QQ475_18175) comL 3766740..3767477 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  QQ475_RS18220 (QQ475_18180) raiA 3767748..3768089 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  QQ475_RS18225 (QQ475_18185) pheL 3768193..3768240 (+) 48 WP_001700969.1 pheA operon leader peptide PheL -
  QQ475_RS18230 (QQ475_18190) pheA 3768339..3769499 (+) 1161 WP_000200101.1 bifunctional chorismate mutase/prephenate dehydratase -
  QQ475_RS18235 (QQ475_18195) tyrA 3769542..3770663 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  QQ475_RS18240 (QQ475_18200) aroF 3770674..3771744 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  QQ475_RS18245 (QQ475_18205) yfiL 3771954..3772319 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=772805 QQ475_RS18215 WP_000197686.1 3766740..3767477(+) (comL) [Escherichia coli strain PS00260.4]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=772805 QQ475_RS18215 WP_000197686.1 3766740..3767477(+) (comL) [Escherichia coli strain PS00260.4]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376