Detailed information NTG0772793

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PF364_RS01725
• Genome accession: NZ_CP115621
• Coordinates: 352534..353394 (-)
• Length: 286 a.a.
• NCBI ID: WP_001152273.1
• Uniprot ID: A0A836M4G0
• Organism: Acinetobacter baumannii strain 2022CK-00480
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 347534..358394

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PF364_RS01700 (PF364_01700)	-	348425..349735 (+)	1311	WP_031959605.1	tetratricopeptide repeat protein	-
PF364_RS01705 (PF364_01705)	-	349812..350138 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
PF364_RS01710 (PF364_01710)	rlmB	350240..350989 (+)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
PF364_RS01715 (PF364_01715)	-	351025..351939 (+)	915	WP_000075014.1	DMT family transporter	-
PF364_RS01720 (PF364_01720)	coaE	351936..352532 (-)	597	WP_000874125.1	dephospho-CoA kinase	-
PF364_RS01725 (PF364_01725)	pilD	352534..353394 (-)	861	WP_001152273.1	A24 family peptidase	Machinery gene
PF364_RS01730 (PF364_01730)	pilC	353394..354620 (-)	1227	WP_000279218.1	type II secretion system F family protein	Machinery gene
PF364_RS01735 (PF364_01735)	pilB	354650..356362 (-)	1713	WP_031959606.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PF364_RS01740 (PF364_01740)	tpiA	356653..357447 (+)	795	WP_000016939.1	triose-phosphate isomerase	-
PF364_RS01745 (PF364_01745)	secG	357460..357789 (+)	330	WP_000555570.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32088.53 Da
• Isoelectric Point: 7.1041

>NTDB_id=772793 PF364_RS01725 WP_001152273.1 352534..353394(-) (pilD) [Acinetobacter baumannii strain 2022CK-00480]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=772793 PF364_RS01725 WP_001152273.1 352534..353394(-) (pilD) [Acinetobacter baumannii strain 2022CK-00480]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTATGTTAAGAGGAAAGTGTGGCCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGTATTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTTCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAGGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

3D structure

• AlphaFold DB: A0A836M4G0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.951	100	0.99
pilD	Acinetobacter nosocomialis M2	98.601	100	0.986
pilD	Vibrio cholerae strain A1552	54.044	95.105	0.514
pilD	Vibrio campbellii strain DS40M4	52.92	95.804	0.507
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441