Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   H7K64_RS18195 Genome accession   NZ_AP022227
Coordinates   3894542..3895177 (-) Length   211 a.a.
NCBI ID   WP_043214385.1    Uniprot ID   -
Organism   Pseudomonas putida strain WP8-W18-CRE-01     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3889542..3900177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7K64_RS18165 (WP8W18C01_36090) murB 3890635..3891651 (-) 1017 WP_043214395.1 UDP-N-acetylmuramate dehydrogenase -
  H7K64_RS18170 (WP8W18C01_36100) - 3891648..3892112 (-) 465 WP_043214393.1 low molecular weight protein-tyrosine-phosphatase -
  H7K64_RS18175 (WP8W18C01_36110) kdsB 3892112..3892876 (-) 765 WP_070573253.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  H7K64_RS18180 (WP8W18C01_36120) - 3892873..3893058 (-) 186 WP_003247142.1 Trm112 family protein -
  H7K64_RS18185 (WP8W18C01_36130) lpxK 3893101..3894111 (-) 1011 WP_090343775.1 tetraacyldisaccharide 4'-kinase -
  H7K64_RS18190 (WP8W18C01_36140) - 3894111..3894545 (-) 435 WP_043214387.1 ExbD/TolR family protein -
  H7K64_RS18195 (WP8W18C01_36150) exbB 3894542..3895177 (-) 636 WP_043214385.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  H7K64_RS18200 (WP8W18C01_36160) comA 3895288..3897507 (-) 2220 WP_182815989.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  H7K64_RS18205 (WP8W18C01_36170) - 3897650..3898291 (+) 642 WP_139205743.1 DUF2062 domain-containing protein -
  H7K64_RS18210 (WP8W18C01_36180) - 3898175..3898954 (-) 780 WP_043214381.1 ABC transporter permease -
  H7K64_RS18215 (WP8W18C01_36190) - 3898951..3899883 (-) 933 WP_070573244.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22828.07 Da        Isoelectric Point: 7.3616

>NTDB_id=77275 H7K64_RS18195 WP_043214385.1 3894542..3895177(-) (exbB) [Pseudomonas putida strain WP8-W18-CRE-01]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYIGTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANPAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVLQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=77275 H7K64_RS18195 WP_043214385.1 3894542..3895177(-) (exbB) [Pseudomonas putida strain WP8-W18-CRE-01]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCCGCCATGGCTATCGTCGC
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTGACCCCACCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCGTTGGGCGAAATCCTCGCTGCGGGCCTGGCCAAC
TCCCGCCATGGTCGCGAGATCATGAAAGAGTGCATCGAGGAGGCCGCCTCCCGGGTCATCCATGAGTTGGAGCGCTATAT
CGGTACATTGGGCACCATCGCCGCGATGGCCCCCTTGCTCGGCCTTCTGGGTACGGTGCTGGGCATGATCGATATCTTCA
GCGCCTTCATGGGCTCGCAGATGACTGCCAACCCGGCCGTTCTCGCGGGTGGTATTTCCAAGGCCCTGGTCACCACAGCC
GCCGGCCTGATGGTGGGGATCCCGGCGGTCTTCTTCCACCGGTTCCTGCAGCGACGCATCGATGAGCTGGTCGTCGGCAT
GGAGCAGGAGGCAATCAAGCTGGTCGAGGTGCTGCAAGGCGATCGCGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.517

100

0.815

Multiple sequence alignment