Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   PAN99_RS11875 Genome accession   NZ_CP115604
Coordinates   2463801..2464136 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain FJAT-54560     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2458801..2469136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PAN99_RS11855 (PAN99_11855) gcvT 2459411..2460511 (-) 1101 WP_095315606.1 glycine cleavage system aminomethyltransferase GcvT -
  PAN99_RS11860 (PAN99_11860) - 2460935..2462605 (+) 1671 WP_003153107.1 DEAD/DEAH box helicase -
  PAN99_RS11865 (PAN99_11865) - 2462623..2463417 (+) 795 WP_014305407.1 YqhG family protein -
  PAN99_RS11870 (PAN99_11870) sinI 2463594..2463767 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  PAN99_RS11875 (PAN99_11875) sinR 2463801..2464136 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  PAN99_RS11880 (PAN99_11880) tasA 2464184..2464969 (-) 786 WP_015388008.1 biofilm matrix protein TasA -
  PAN99_RS11885 (PAN99_11885) sipW 2465033..2465617 (-) 585 WP_012117977.1 signal peptidase I SipW -
  PAN99_RS11890 (PAN99_11890) tapA 2465589..2466260 (-) 672 WP_003153099.1 amyloid fiber anchoring/assembly protein TapA -
  PAN99_RS11895 (PAN99_11895) - 2466519..2466848 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  PAN99_RS11900 (PAN99_11900) - 2466888..2467067 (-) 180 WP_003153093.1 YqzE family protein -
  PAN99_RS11905 (PAN99_11905) comGG 2467124..2467501 (-) 378 WP_014305410.1 competence type IV pilus minor pilin ComGG Machinery gene
  PAN99_RS11910 (PAN99_11910) comGF 2467502..2468002 (-) 501 WP_235570156.1 competence type IV pilus minor pilin ComGF -
  PAN99_RS11915 (PAN99_11915) comGE 2467911..2468225 (-) 315 WP_057080485.1 competence type IV pilus minor pilin ComGE Machinery gene
  PAN99_RS11920 (PAN99_11920) comGD 2468209..2468646 (-) 438 WP_015388002.1 competence type IV pilus minor pilin ComGD Machinery gene
  PAN99_RS11925 (PAN99_11925) comGC 2468636..2468944 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=772727 PAN99_RS11875 WP_003153104.1 2463801..2464136(+) (sinR) [Bacillus velezensis strain FJAT-54560]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=772727 PAN99_RS11875 WP_003153104.1 2463801..2464136(+) (sinR) [Bacillus velezensis strain FJAT-54560]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991