Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   QR567_RS16695 Genome accession   NZ_CP127388
Coordinates   3501683..3502327 (+) Length   214 a.a.
NCBI ID   WP_003090351.1    Uniprot ID   A0A0H2ZC55
Organism   Pseudomonas aeruginosa strain 13-201116-5231     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3496683..3507327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR567_RS16680 - 3497317..3498531 (+) 1215 WP_003090357.1 MFS transporter -
  QR567_RS16685 - 3498547..3499575 (-) 1029 WP_003090355.1 AraC family transcriptional regulator -
  QR567_RS16690 pqsH 3500193..3501341 (+) 1149 WP_003090354.1 2-heptyl-3-hydroxy-4(1H)-quinolone synthase -
  QR567_RS16695 letA 3501683..3502327 (+) 645 WP_003090351.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  QR567_RS16700 uvrC 3502328..3504154 (+) 1827 WP_003090350.1 excinuclease ABC subunit UvrC -
  QR567_RS16705 pgsA 3504188..3504748 (+) 561 WP_003090349.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QR567_RS16715 - 3505625..3506485 (-) 861 WP_223193878.1 fimbrial protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23608.53 Da        Isoelectric Point: 6.1073

>NTDB_id=772703 QR567_RS16695 WP_003090351.1 3501683..3502327(+) (letA) [Pseudomonas aeruginosa strain 13-201116-5231]
MIKVLVVDDHDLVRTGITRMLADIEGLQVVGQADCGEDCLKLARELKPDVVLMDVKMPGIGGLEATRKLLRSQPDIKVVV
VTVCEEDPFPTRLMQAGAAGYMTKGAGLEEMVQAIRQVFAGQRYISPQIAQQLALKSFQPQQHDSPFDSLSEREIQIALM
IANCHKVQSISDKLCLSPKTVNTYRYRIFEKLSITSDVELALLAVRHGMVDAAS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=772703 QR567_RS16695 WP_003090351.1 3501683..3502327(+) (letA) [Pseudomonas aeruginosa strain 13-201116-5231]
GTGATTAAGGTGCTGGTGGTCGACGACCACGATCTGGTACGCACCGGTATTACCCGCATGCTGGCCGACATCGAAGGCTT
GCAAGTGGTCGGCCAGGCCGACTGCGGTGAAGACTGTCTGAAACTGGCCCGCGAGCTGAAGCCGGATGTCGTCCTGATGG
ACGTGAAGATGCCCGGTATCGGCGGCCTGGAGGCGACCCGCAAGCTGCTGCGCAGCCAGCCCGACATCAAGGTCGTGGTA
GTCACCGTCTGCGAAGAGGATCCGTTCCCCACCCGCCTCATGCAGGCCGGCGCCGCCGGCTACATGACCAAGGGCGCGGG
GCTGGAGGAAATGGTCCAGGCGATTCGCCAGGTCTTCGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAACTGG
CGCTGAAGTCCTTCCAGCCGCAGCAGCACGATTCCCCCTTCGATTCGCTGTCCGAGCGCGAGATCCAGATCGCCCTGATG
ATCGCCAACTGCCACAAGGTGCAGAGCATCTCCGACAAGCTGTGCCTGTCGCCGAAGACCGTGAATACCTATCGCTACCG
CATCTTCGAGAAGCTCTCGATCACCAGCGACGTGGAGCTAGCGCTGCTCGCCGTCCGCCACGGCATGGTCGATGCCGCCA
GCTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-204)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZC55

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

54.502

98.598

0.537
  letA Legionella pneumophila strain ERS1305867

54.502

98.598

0.537