Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PDL12_RS21715 Genome accession   NZ_CP115484
Coordinates   5238005..5238571 (-) Length   188 a.a.
NCBI ID   WP_270167000.1    Uniprot ID   -
Organism   Paenibacillus sp. SYP-B4298     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5233005..5243571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDL12_RS21690 rplI 5233626..5234072 (-) 447 WP_270166990.1 50S ribosomal protein L9 -
  PDL12_RS21695 - 5234069..5236039 (-) 1971 WP_270166992.1 DHH family phosphoesterase -
  PDL12_RS21700 - 5236058..5236996 (-) 939 WP_270166994.1 DUF2232 domain-containing protein -
  PDL12_RS21705 - 5237069..5237494 (-) 426 WP_270166996.1 CBS domain-containing protein -
  PDL12_RS21710 rpsR 5237705..5237986 (-) 282 WP_028563588.1 30S ribosomal protein S18 -
  PDL12_RS21715 ssbA 5238005..5238571 (-) 567 WP_270167000.1 single-stranded DNA-binding protein Machinery gene
  PDL12_RS21720 rpsF 5238611..5238895 (-) 285 WP_270167002.1 30S ribosomal protein S6 -
  PDL12_RS21730 - 5239540..5239761 (-) 222 WP_270167004.1 DUF951 domain-containing protein -
  PDL12_RS21735 - 5239798..5240625 (-) 828 WP_270167011.1 mechanosensitive ion channel family protein -
  PDL12_RS21740 - 5240646..5240891 (-) 246 WP_270167012.1 DUF3343 domain-containing protein -
  PDL12_RS21745 yyaC 5241006..5241587 (+) 582 WP_270167013.1 spore protease YyaC -
  PDL12_RS21750 - 5241600..5242100 (-) 501 WP_270167015.1 DUF4446 family protein -
  PDL12_RS21755 - 5242169..5243344 (-) 1176 WP_270167017.1 aminotransferase class V-fold PLP-dependent enzyme -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20111.73 Da        Isoelectric Point: 4.8369

>NTDB_id=772632 PDL12_RS21715 WP_270167000.1 5238005..5238571(-) (ssbA) [Paenibacillus sp. SYP-B4298]
MLNRVILIGRLTRDPEMRYTPAGVAVTQFTLAVDRPFTSSQGEREADFIPVVTWRQLAETCANYLRKGRLTAVEGRIQVR
SYDNNEGKRVYVTEVIADNVRFLESNRDNNGSREEFSGGGGSGGGYSGGGQGGSNYGGGNYSGGGQGGGNSSYGGGRPGN
NSPSRNNNNDPFSDDGRPIDISEDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=772632 PDL12_RS21715 WP_270167000.1 5238005..5238571(-) (ssbA) [Paenibacillus sp. SYP-B4298]
ATGTTGAACCGTGTTATTCTGATAGGCAGACTCACAAGAGACCCGGAGATGCGTTATACCCCTGCGGGTGTAGCCGTTAC
CCAATTCACTCTTGCTGTGGATCGGCCGTTCACGTCCAGTCAGGGCGAGCGTGAGGCAGACTTTATCCCGGTGGTGACTT
GGCGTCAGTTGGCAGAAACCTGCGCGAATTATCTTCGCAAGGGGCGTCTGACAGCGGTCGAGGGCCGTATCCAGGTTCGT
AGCTATGACAACAATGAAGGCAAGCGTGTCTACGTCACTGAGGTGATTGCAGACAATGTGCGCTTCTTGGAGTCTAACCG
TGACAACAATGGCTCCCGTGAGGAGTTCAGCGGCGGTGGCGGTAGTGGCGGTGGATATAGCGGTGGAGGTCAAGGCGGAA
GCAACTATGGTGGAGGCAATTACAGCGGCGGTGGCCAAGGTGGAGGCAACTCCTCATATGGCGGAGGCCGTCCTGGAAAT
AATTCCCCATCACGGAATAACAACAACGATCCGTTCTCGGATGACGGTCGCCCGATCGATATATCAGAGGATGATTTGCC
ATTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.596

100

0.516
  ssb Latilactobacillus sakei subsp. sakei 23K

46.032

100

0.463