Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   PDI73_RS09135 Genome accession   NZ_CP115479
Coordinates   1884225..1884716 (-) Length   163 a.a.
NCBI ID   WP_012898637.1    Uniprot ID   A0A4P6JE80
Organism   Lactococcus lactis strain EP2     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1879225..1889716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDI73_RS09135 (PDI73_09135) comX 1884225..1884716 (-) 492 WP_012898637.1 hypothetical protein Regulator
  PDI73_RS09140 (PDI73_09140) ezrA 1884973..1886703 (-) 1731 WP_003132670.1 septation ring formation regulator EzrA -
  PDI73_RS09145 (PDI73_09145) tsf 1886908..1887936 (-) 1029 WP_277730164.1 translation elongation factor Ts -
  PDI73_RS09150 (PDI73_09150) rpsB 1888059..1888826 (-) 768 WP_011836067.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 19791.63 Da        Isoelectric Point: 5.6118

>NTDB_id=772501 PDI73_RS09135 WP_012898637.1 1884225..1884716(-) (comX) [Lactococcus lactis strain EP2]
MTYYLEEEDFENLFSEMKPIVMKLMKQIRIRTWKIEDYLQEGMIILHLLLEEQSDGQKLHTKFKVKYHQRLIDELRRSYA
KKRSHDHFIGLDVYECSDWINSGDTSPDNEVVFNHLLAEVYEGLSAHYQDLLLRQMRGEELTRMQRYRLREKIKAILFSE
DEE

Nucleotide


Download         Length: 492 bp        

>NTDB_id=772501 PDI73_RS09135 WP_012898637.1 1884225..1884716(-) (comX) [Lactococcus lactis strain EP2]
ATGACATATTACTTGGAAGAAGAGGATTTTGAAAATCTGTTTTCAGAAATGAAACCTATAGTTATGAAATTAATGAAACA
AATTCGCATTAGAACATGGAAAATAGAGGATTATCTTCAAGAGGGGATGATTATTTTACATCTTCTATTAGAAGAGCAGA
GCGATGGTCAAAAGCTGCATACAAAATTTAAGGTAAAGTATCATCAAAGATTAATAGATGAATTAAGACGAAGTTATGCA
AAGAAACGAAGCCATGACCATTTTATAGGTTTAGATGTTTATGAATGCTCAGACTGGATAAATTCAGGTGATACTAGTCC
AGATAATGAAGTGGTCTTCAATCATTTGCTGGCAGAAGTATATGAAGGTTTGAGCGCACATTATCAAGACTTACTACTTC
GACAAATGCGAGGAGAAGAACTAACTCGCATGCAACGGTATCGCCTTCGTGAAAAAATAAAGGCCATCTTATTTTCAGAA
GACGAAGAGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4P6JE80

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX Lactococcus lactis subsp. lactis strain DGCC12653

99.387

100

0.994
  comX Lactococcus lactis subsp. cremoris KW2

76.074

100

0.761