Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PDI56_RS13800 Genome accession   NZ_CP115473
Coordinates   2755952..2756347 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain AF4004     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2750952..2761347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDI56_RS13770 (PDI56_13770) - 2752210..2752614 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  PDI56_RS13775 (PDI56_13775) - 2752952..2753044 (+) 93 WP_001790611.1 hypothetical protein -
  PDI56_RS13780 (PDI56_13780) - 2753176..2753409 (+) 234 WP_000384523.1 DUF1146 family protein -
  PDI56_RS13785 (PDI56_13785) murA 2753520..2754785 (+) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  PDI56_RS13790 (PDI56_13790) fabZ 2754819..2755259 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  PDI56_RS13795 (PDI56_13795) - 2755318..2755758 (-) 441 WP_000846746.1 YwpF-like family protein -
  PDI56_RS13800 (PDI56_13800) ssb 2755952..2756347 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  PDI56_RS13805 (PDI56_13805) sceD 2756736..2757431 (+) 696 WP_000752005.1 lytic transglycosylase SceD -
  PDI56_RS13810 (PDI56_13810) tenA 2757818..2758507 (+) 690 WP_000396077.1 thiaminase II -
  PDI56_RS13815 (PDI56_13815) thiD 2758500..2759330 (+) 831 WP_000594954.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  PDI56_RS13820 (PDI56_13820) thiM 2759314..2760105 (+) 792 WP_001108483.1 hydroxyethylthiazole kinase -
  PDI56_RS13825 (PDI56_13825) thiE 2760107..2760748 (+) 642 WP_000483153.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=772285 PDI56_RS13800 WP_000932694.1 2755952..2756347(+) (ssb) [Staphylococcus aureus strain AF4004]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=772285 PDI56_RS13800 WP_000932694.1 2755952..2756347(+) (ssb) [Staphylococcus aureus strain AF4004]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992