Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   PDI56_RS05610 Genome accession   NZ_CP115473
Coordinates   1103838..1104824 (-) Length   328 a.a.
NCBI ID   WP_000959282.1    Uniprot ID   A0A7U7EXT8
Organism   Staphylococcus aureus strain AF4004     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1098838..1109824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDI56_RS05585 (PDI56_05585) - 1099098..1099445 (-) 348 WP_001242103.1 hypothetical protein -
  PDI56_RS05590 (PDI56_05590) - 1099631..1100224 (+) 594 WP_000224619.1 CYTH domain-containing protein -
  PDI56_RS05595 (PDI56_05595) - 1100328..1100693 (+) 366 WP_000214070.1 truncated hemoglobin YjbI -
  PDI56_RS05600 (PDI56_05600) yjbH 1100716..1101522 (+) 807 WP_000896697.1 protease adaptor protein YjbH -
  PDI56_RS05605 (PDI56_05605) pepF 1101982..1103790 (-) 1809 WP_000082725.1 oligoendopeptidase F -
  PDI56_RS05610 (PDI56_05610) coiA 1103838..1104824 (-) 987 WP_000959282.1 competence protein CoiA family protein Machinery gene
  PDI56_RS05615 (PDI56_05615) mecA 1104945..1105664 (-) 720 WP_001217728.1 adaptor protein MecA -
  PDI56_RS05620 (PDI56_05620) spxA 1106035..1106430 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  PDI56_RS05625 (PDI56_05625) trpS 1106724..1107713 (+) 990 WP_000448934.1 tryptophan--tRNA ligase -
  PDI56_RS05630 (PDI56_05630) opp4C 1107755..1108636 (-) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  PDI56_RS05635 (PDI56_05635) opp4B 1108648..1109610 (-) 963 WP_000915997.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38878.55 Da        Isoelectric Point: 9.5714

>NTDB_id=772268 PDI56_RS05610 WP_000959282.1 1103838..1104824(-) (coiA) [Staphylococcus aureus strain AF4004]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFHSLFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKIIELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVYNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=772268 PDI56_RS05610 WP_000959282.1 1103838..1104824(-) (coiA) [Staphylococcus aureus strain AF4004]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCTGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCATAGTTTGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTATTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGTACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7EXT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

100

100

1
  coiA Staphylococcus aureus MW2

97.561

100

0.976