Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   PDI56_RS02425 Genome accession   NZ_CP115473
Coordinates   449530..449976 (+) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain AF4004     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 444530..454976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDI56_RS02390 (PDI56_02385) - 445024..445227 (+) 204 WP_000087561.1 YqgQ family protein -
  PDI56_RS02395 (PDI56_02390) - 445224..446210 (+) 987 WP_000161311.1 ROK family glucokinase -
  PDI56_RS02400 (PDI56_02395) - 446210..446539 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  PDI56_RS02405 (PDI56_02400) - 446536..447159 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  PDI56_RS02410 (PDI56_02405) comGA 447211..448185 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  PDI56_RS02415 (PDI56_02410) comGB 448157..449227 (+) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  PDI56_RS02420 (PDI56_02415) comGC 449241..449552 (+) 312 WP_031786220.1 competence type IV pilus major pilin ComGC Machinery gene
  PDI56_RS02425 (PDI56_02420) comGD 449530..449976 (+) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  PDI56_RS02430 (PDI56_02425) comGE 449963..450262 (+) 300 WP_000844410.1 hypothetical protein Machinery gene
  PDI56_RS02435 (PDI56_02430) comGF 450180..450677 (+) 498 WP_001788897.1 competence type IV pilus minor pilin ComGF Machinery gene
  PDI56_RS02440 (PDI56_02435) - 450774..450920 (+) 147 WP_001792109.1 hypothetical protein -
  PDI56_RS02445 (PDI56_02440) - 450910..451434 (+) 525 WP_001015120.1 shikimate kinase -
  PDI56_RS02450 (PDI56_02445) gcvT 451593..452684 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  PDI56_RS02455 (PDI56_02450) gcvPA 452704..454050 (+) 1347 WP_000019691.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=772260 PDI56_RS02425 WP_001788899.1 449530..449976(+) (comGD) [Staphylococcus aureus strain AF4004]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=772260 PDI56_RS02425 WP_001788899.1 449530..449976(+) (comGD) [Staphylococcus aureus strain AF4004]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1