Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   AVT_RS21700 Genome accession   NZ_CP115303
Coordinates   4190707..4191501 (+) Length   264 a.a.
NCBI ID   WP_033686380.1    Uniprot ID   A0A4Y6EYG5
Organism   Bacillus tropicus strain JMT105-2     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 4185707..4196501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVT_RS21685 (AVT_21685) argR 4186546..4186995 (+) 450 WP_001032581.1 arginine repressor ArgR -
  AVT_RS21690 (AVT_21690) recN 4187263..4189002 (+) 1740 WP_263701559.1 DNA repair protein RecN Machinery gene
  AVT_RS21695 (AVT_21695) spoIVB 4189121..4190419 (+) 1299 WP_061687160.1 SpoIVB peptidase -
  AVT_RS21700 (AVT_21700) spo0A 4190707..4191501 (+) 795 WP_033686380.1 sporulation transcription factor Spo0A Regulator
  AVT_RS21705 (AVT_21705) - 4191789..4193315 (+) 1527 WP_270184813.1 glycosyltransferase family 39 protein -
  AVT_RS21710 (AVT_21710) - 4193504..4193650 (-) 147 WP_001247671.1 YycC family protein -
  AVT_RS21715 (AVT_21715) - 4193701..4194429 (+) 729 WP_087966041.1 glycerophosphodiester phosphodiesterase -
  AVT_RS21720 (AVT_21720) - 4194478..4194711 (-) 234 WP_087966042.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29454.20 Da        Isoelectric Point: 7.4718

>NTDB_id=771752 AVT_RS21700 WP_033686380.1 4190707..4191501(+) (spo0A) [Bacillus tropicus strain JMT105-2]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLKDKQPDVLVLDIIMPHLDGLAVLEKMRHIERLRQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKANATIKRPLPSFRSATTIDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=771752 AVT_RS21700 WP_033686380.1 4190707..4191501(+) (spo0A) [Bacillus tropicus strain JMT105-2]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAATTAGTATCAATGTTAGAGAGTTATGTAGCTGCTCAAGA
TGATATGGAAGTAATCGGTACTGCTTATAATGGTCAAGAGTGTTTAAATTTATTAAAAGATAAGCAGCCGGATGTACTTG
TTTTAGATATTATTATGCCACATTTAGATGGTTTAGCTGTACTAGAGAAAATGCGACATATTGAAAGGTTAAGACAGCCT
AGCGTAATTATGTTGACAGCATTTGGTCAAGAAGATGTGACGAAAAAAGCGGTTGACTTAGGTGCTTCCTATTTCATATT
AAAACCATTTGATATGGAGAATTTAACGAGTCATATTCGTCAAGTGAGCGGTAAAGCGAACGCTACCATTAAACGTCCAC
TTCCATCTTTCCGTTCAGCAACGACAATAGATGGCAAGCCGAAAAACTTAGATGCGAGCATTACGAGTATCATCCATGAA
ATTGGTGTGCCTGCTCATATTAAAGGGTATATGTACTTAAGGGAAGCGATCTCTATGGTGTACAACGATATCGAATTACT
TGGATCTATTACGAAAGTATTGTATCCAGATATCGCGAAGAAATATAATACAACAGCAAGCCGTGTTGAGCGTGCAATCC
GTCACGCAATTGAAGTAGCATGGAGTCGTGGGAATATTGATTCTATTTCGTCCTTATTCGGTTATACAGTATCCATGTCA
AAAGCAAAACCTACGAATTCCGAGTTCATCGCAATGGTTGCGGATAAGCTGAGACTTGAACATAAGGCTAGCTGA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y6EYG5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.899

100

0.818