Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AVT_RS21690 Genome accession   NZ_CP115303
Coordinates   4187263..4189002 (+) Length   579 a.a.
NCBI ID   WP_263701559.1    Uniprot ID   -
Organism   Bacillus tropicus strain JMT105-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4182263..4194002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVT_RS21670 (AVT_21670) ispA 4182474..4183364 (+) 891 WP_270184811.1 (2E,6E)-farnesyl diphosphate synthase -
  AVT_RS21675 (AVT_21675) dxs 4183668..4185560 (+) 1893 WP_270184812.1 1-deoxy-D-xylulose-5-phosphate synthase -
  AVT_RS21680 (AVT_21680) - 4185564..4186403 (+) 840 WP_001274742.1 TlyA family rRNA (cytidine-2'-O)-methyltransferase -
  AVT_RS21685 (AVT_21685) argR 4186546..4186995 (+) 450 WP_001032581.1 arginine repressor ArgR -
  AVT_RS21690 (AVT_21690) recN 4187263..4189002 (+) 1740 WP_263701559.1 DNA repair protein RecN Machinery gene
  AVT_RS21695 (AVT_21695) spoIVB 4189121..4190419 (+) 1299 WP_061687160.1 SpoIVB peptidase -
  AVT_RS21700 (AVT_21700) spo0A 4190707..4191501 (+) 795 WP_033686380.1 sporulation transcription factor Spo0A Regulator
  AVT_RS21705 (AVT_21705) - 4191789..4193315 (+) 1527 WP_270184813.1 glycosyltransferase family 39 protein -
  AVT_RS21710 (AVT_21710) - 4193504..4193650 (-) 147 WP_001247671.1 YycC family protein -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65779.83 Da        Isoelectric Point: 4.8242

>NTDB_id=771751 AVT_RS21690 WP_263701559.1 4187263..4189002(+) (recN) [Bacillus tropicus strain JMT105-2]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDDKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSVLKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGDRIVKQL
DIYQNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKMDEENDLTEERLQISNFEKIYKALGDAYRSLSA
DGQGLDNVRSAMGQMESITHLDEVYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTKKQLKELESVILKEATLLSNMRHELAEHLTNAIHQELKELYMEKTKFEVRIM
KREGNAEEPLVEGAPVRLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=771751 AVT_RS21690 WP_263701559.1 4187263..4189002(+) (recN) [Bacillus tropicus strain JMT105-2]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAGGCATTAAATATTTCTTTTCAAAAAGGATTAACGGTTTT
AAGTGGTGAAACAGGGGCCGGAAAATCGATTATTATTGATGCGATTAGTTTACTTGTAGGTGGCCGTGGTTCAGCAGAAT
TTGTTCGATACGGAACAGAAAAAGCTGAAATAGAGGGGCTATTTTATGTAGAAGATGATAAGCATCCATGTATTGAAAAG
GCTGAAGAGTTGGACATAGAAATAGAAGACGGCATGATTATTTTGAAGCGTGATATCGCTGCAAACGGAAAAAGTGTATG
TCGTGTAAATGGAAAACTAGTTACCCTTAGTGTATTAAAAGAAATTGGAAAAACACTTGTTGATATTCATGGGCAGCACG
AAACGCAAGACTTAATGAATGAAGAACGTCATCTATTTATGCTTGATCATTTTGATGGAGATCGTATTGTTAAACAATTG
GATATATACCAAAACGTATACGCTGACTATGAGAAGTTAAAAAAACAGTTAAAATCGTTAAGTGAAAATGAACAACAAAT
GGCGCATCGCTTAGATTTAATCCAATTCCAACATGAAGAAATCCGTAAGGCGGATTTAAAGATGGATGAAGAAAATGACT
TAACTGAAGAACGATTGCAAATTTCTAATTTTGAAAAAATTTACAAAGCATTAGGGGATGCATATCGCTCGTTAAGTGCT
GACGGACAAGGATTAGATAATGTACGAAGCGCAATGGGACAAATGGAGAGTATTACACATTTAGATGAAGTGTATCAAGA
AAATCATGATTCCATTGCAAATAGCTATTACTTATTAGAAGAAGTAGCGTACCAACTGAGAGAAAAGCTCGATATGATGG
AATATGATCCGAATCGTTTAGATGAAATTGAAACGCGTTTAAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAACAAGAGATTTTTACGATTGAAAATAAAGACGTTCATATTGAAAC
GACGAAGAAACAGTTGAAGGAATTAGAAAGTGTTATTCTGAAAGAAGCAACGTTGTTAAGTAATATGCGTCATGAACTTG
CAGAGCATCTTACAAATGCCATTCATCAGGAATTAAAAGAATTATATATGGAAAAAACAAAATTTGAAGTGAGAATTATG
AAGCGAGAAGGAAATGCGGAAGAGCCTCTCGTGGAGGGAGCACCGGTAAGACTTACGGCGGATGGTTATGATCATGTGGA
ATTTTATATTTCAACAAATCCAGGTGAGCCGCTAAAACCACTTTCAAAAGTGGCTTCTGGCGGAGAGTTATCTCGTATTA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGTGTTGCATCTGTTATTTTTGATGAAGTGGATACGGGTGTAAGT
GGCCGGGTTGCACAGGCTATTGCGGAAAAAATTTATCGAGTATCAGTAAACTCACAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCATCAATGGCGGATTCGCATTTATTTATTCGAAAACAAGTAGCGAATGATCGAACAATTACATCCGTTACGG
TTTTAACTATGGAAGATAAAGTAACAGAAATAGCTCGAATGATTTCGGGTGTAGAAATTACAGATTTAACGACAGAACAT
GCGAAAGAATTACTTACGCAAGCGCATCATTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.104

100

0.601