Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   AVT_RS09330 Genome accession   NZ_CP115303
Coordinates   1789805..1789981 (-) Length   58 a.a.
NCBI ID   WP_087965781.1    Uniprot ID   -
Organism   Bacillus tropicus strain JMT105-2     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 1784805..1794981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVT_RS09310 (AVT_09310) - 1785424..1786170 (-) 747 WP_029437838.1 YjbA family protein -
  AVT_RS09315 (AVT_09315) - 1786313..1787101 (-) 789 WP_029437837.1 DUF2268 domain-containing protein -
  AVT_RS09320 (AVT_09320) fabF 1787208..1788446 (-) 1239 WP_000412652.1 beta-ketoacyl-ACP synthase II -
  AVT_RS09325 (AVT_09325) fabH 1788478..1789410 (-) 933 WP_087965508.1 beta-ketoacyl-ACP synthase III -
  AVT_RS09330 (AVT_09330) comZ 1789805..1789981 (-) 177 WP_087965781.1 ComZ family protein Regulator
  AVT_RS09335 (AVT_09335) - 1790035..1790907 (-) 873 WP_131101622.1 NAD-dependent epimerase/dehydratase family protein -
  AVT_RS09340 (AVT_09340) - 1790937..1791671 (-) 735 WP_270185387.1 alpha/beta hydrolase -
  AVT_RS09345 (AVT_09345) - 1791828..1792010 (+) 183 WP_001211116.1 YjzD family protein -
  AVT_RS09350 (AVT_09350) clpC 1792048..1794648 (-) 2601 WP_087965510.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 58 a.a.        Molecular weight: 6549.67 Da        Isoelectric Point: 4.3010

>NTDB_id=771723 AVT_RS09330 WP_087965781.1 1789805..1789981(-) (comZ) [Bacillus tropicus strain JMT105-2]
MNEKSMQFLQIAMKHLPEAKAILDDNGIALDMEKAQPVLELLMKVMSEAYELGKADQE

Nucleotide


Download         Length: 177 bp        

>NTDB_id=771723 AVT_RS09330 WP_087965781.1 1789805..1789981(-) (comZ) [Bacillus tropicus strain JMT105-2]
ATGAATGAGAAAAGCATGCAATTTTTACAAATCGCAATGAAGCATTTACCAGAAGCAAAGGCCATTTTAGATGATAATGG
AATTGCGCTTGACATGGAGAAAGCTCAGCCAGTATTAGAGTTATTGATGAAAGTTATGAGCGAAGCATATGAGCTTGGAA
AAGCAGATCAAGAATAA

Domains

Predicted by InterproScan.

ComZ (ComZ)

(3-57)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

61.818

94.828

0.586